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The map label for this gene is ompK [H]

Identifier: 218708706

GI number: 218708706

Start: 719547

End: 720434

Strand: Reverse

Name: ompK [H]

Synonym: VS_0685

Alternate gene names: 218708706

Gene position: 720434-719547 (Counterclockwise)

Preceding gene: 218708707

Following gene: 218708705

Centisome position: 21.84

GC content: 41.1

Gene sequence:

>888_bases
ATGCTCGGCATTCGGACATATAAACACGCACGGATTAGCGGGTTACTTATTTCAAACATAGAGAGTTCCATTATGCGTAA
ATCACTTTTAACTCTTGGCCTACTTGCAGCAGCTTCTGCTCCAGTAATGGCGGCTGATTATTCTGACGGCGATACTCACA
AGAATGATTACAACTGGATGCAGTTTAATATCATGCACACTATCGATGAGAAGCCTCAAGACAAAGATCATACTTATCTT
GAAATGGAGTTTGGTGGACGCTCTGGTATCTTCGATCTTTACGGTTACATTGATGTATTCAACCTAACTAACGATAGCGG
CAGCGATAAAGCAAAAGACGATCAACTGTTTGTTAAATTTGCGCCTCGTATGTCTATCGATGGCCTAACTGGTAAAGACC
TTTCTTTTGGTCCAGTACAAGAACTATACGTTGCAAACTACACAACTATCGATGGCAAAGCTGACGGTGGTTACGCAACT
AAAACAGGTATCGGTTCAGACGTAATGGTACCTTGGTTTGGTAAAATGCAATTCAATCTTTACGCTACGTACGATCTAAA
TACGAAAGATTGGAACGGTTACCAATTTTCTACAAACTGGTTTAAGCCATTCGTAAACTTCGATAACGGTTCATTCATTG
CTTACCAAGGTTACATCGATTACGAGTTTGGTCGTGATAGTTCATACAACCAGTCGAGCAACGGCGGAGCTATGTTCAAT
GGTATTTACTGGCACAATGACCAATTTGCTGTAGGTTACGGTCTTAAATTATACCAAGATGTATACGGTCTAAGAGATGG
TGCTCAAATTGATAGTGCTAACCCACAATACGGCCAGTTCTCTACTTCAGGCGTAGGTCACTACTTCGCAGTAACTTACA
AGTTCTAA

Upstream 100 bases:

>100_bases
ATTAAAGTTCCATCATTTAGATCGTTAGTGTGATCACGCTCACCATAATAATCATAGTTTTCACTCTGTCTCACTTTTAT
TTGAGAACAAAATCGCTATT

Downstream 100 bases:

>100_bases
TCGAACTTCTAAGAAAGTTTCCAAAATGGCACCCTCGGGTGCCATTTTTTATTGCTTTCATTTAATGCCTCGCTATCCTT
GCAGCACCACTTTCTTATCT

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MLGIRTYKHARISGLLISNIESSIMRKSLLTLGLLAAASAPVMAADYSDGDTHKNDYNWMQFNIMHTIDEKPQDKDHTYL
EMEFGGRSGIFDLYGYIDVFNLTNDSGSDKAKDDQLFVKFAPRMSIDGLTGKDLSFGPVQELYVANYTTIDGKADGGYAT
KTGIGSDVMVPWFGKMQFNLYATYDLNTKDWNGYQFSTNWFKPFVNFDNGSFIAYQGYIDYEFGRDSSYNQSSNGGAMFN
GIYWHNDQFAVGYGLKLYQDVYGLRDGAQIDSANPQYGQFSTSGVGHYFAVTYKF

Sequences:

>Translated_295_residues
MLGIRTYKHARISGLLISNIESSIMRKSLLTLGLLAAASAPVMAADYSDGDTHKNDYNWMQFNIMHTIDEKPQDKDHTYL
EMEFGGRSGIFDLYGYIDVFNLTNDSGSDKAKDDQLFVKFAPRMSIDGLTGKDLSFGPVQELYVANYTTIDGKADGGYAT
KTGIGSDVMVPWFGKMQFNLYATYDLNTKDWNGYQFSTNWFKPFVNFDNGSFIAYQGYIDYEFGRDSSYNQSSNGGAMFN
GIYWHNDQFAVGYGLKLYQDVYGLRDGAQIDSANPQYGQFSTSGVGHYFAVTYKF
>Mature_295_residues
MLGIRTYKHARISGLLISNIESSIMRKSLLTLGLLAAASAPVMAADYSDGDTHKNDYNWMQFNIMHTIDEKPQDKDHTYL
EMEFGGRSGIFDLYGYIDVFNLTNDSGSDKAKDDQLFVKFAPRMSIDGLTGKDLSFGPVQELYVANYTTIDGKADGGYAT
KTGIGSDVMVPWFGKMQFNLYATYDLNTKDWNGYQFSTNWFKPFVNFDNGSFIAYQGYIDYEFGRDSSYNQSSNGGAMFN
GIYWHNDQFAVGYGLKLYQDVYGLRDGAQIDSANPQYGQFSTSGVGHYFAVTYKF

Specific function: Serves as receptor for a broad-host-range vibriophage, KVP40 [H]

COG id: COG3248

COG function: function code M; Nucleoside-binding outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli tsx [H]

Homologues:

Organism=Escherichia coli, GI1786612, Length=249, Percent_Identity=31.3253012048193, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003055
- InterPro:   IPR018013 [H]

Pfam domain/function: PF03502 Channel_Tsx [H]

EC number: NA

Molecular weight: Translated: 33179; Mature: 33179

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS00589 PTS_HPR_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGIRTYKHARISGLLISNIESSIMRKSLLTLGLLAAASAPVMAADYSDGDTHKNDYNWM
CCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEE
QFNIMHTIDEKPQDKDHTYLEMEFGGRSGIFDLYGYIDVFNLTNDSGSDKAKDDQLFVKF
EEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEEEEE
APRMSIDGLTGKDLSFGPVQELYVANYTTIDGKADGGYATKTGIGSDVMVPWFGKMQFNL
CCCCEECCCCCCCCCCCCHHHEEEEEEEEECCCCCCCEEEECCCCCCEEEECCCEEEEEE
YATYDLNTKDWNGYQFSTNWFKPFVNFDNGSFIAYQGYIDYEFGRDSSYNQSSNGGAMFN
EEEEECCCCCCCCEEEECCCEEEEEECCCCCEEEEECEEEEECCCCCCCCCCCCCCEEEE
GIYWHNDQFAVGYGLKLYQDVYGLRDGAQIDSANPQYGQFSTSGVGHYFAVTYKF
EEEEECCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEEC
>Mature Secondary Structure
MLGIRTYKHARISGLLISNIESSIMRKSLLTLGLLAAASAPVMAADYSDGDTHKNDYNWM
CCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEE
QFNIMHTIDEKPQDKDHTYLEMEFGGRSGIFDLYGYIDVFNLTNDSGSDKAKDDQLFVKF
EEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEEEEE
APRMSIDGLTGKDLSFGPVQELYVANYTTIDGKADGGYATKTGIGSDVMVPWFGKMQFNL
CCCCEECCCCCCCCCCCCHHHEEEEEEEEECCCCCCCEEEECCCCCCEEEECCCEEEEEE
YATYDLNTKDWNGYQFSTNWFKPFVNFDNGSFIAYQGYIDYEFGRDSSYNQSSNGGAMFN
EEEEECCCCCCCCEEEECCCEEEEEECCCCCEEEEECEEEEECCCCCCCCCCCCCCEEEE
GIYWHNDQFAVGYGLKLYQDVYGLRDGAQIDSANPQYGQFSTSGVGHYFAVTYKF
EEEEECCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]