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The map label for this gene is rdgC

Identifier: 218708601

GI number: 218708601

Start: 600014

End: 600928

Strand: Reverse

Name: rdgC

Synonym: VS_0578

Alternate gene names: 218708601

Gene position: 600928-600014 (Counterclockwise)

Preceding gene: 218708605

Following gene: 218708600

Centisome position: 18.21

GC content: 42.08

Gene sequence:

>915_bases
ATGTGGTTTAAGAATTGCCTCGTCTATCGCTTTAATCGTGATATAGACTTCAACGCAGATCAGCTAGAGAAACAACTTGA
AGAGTTCCGTTTTACCCCATGTGGTAGCCAAGACAAACAGAAGTTTGGTTGGGTAAATGCGATGGGTAGACACGGCGATA
TGATGACGCACGTATCAGAAAACCGCATTCTCATCTGTGCAAAGAAAGAAGAGAAAATGCTTCCAGCTTCTGTGATCAAA
GATTCATTGAATGCAAAAGTAGAAACGCTTGAGGCAGAGTCTGGTACTCCTTTGAAAAAGAAAGAGAAAGACAGCCTAAA
AGAAGACATCATCATCGATCTTCTTCCTCGTGCTTTCAGCCGCAGTAACTTCACTTACGCGCTGATCATGCCGAAAGAAG
GCTTTATTGTTGTTGATGCTAGCAGCTACAAAAAAGCAGAAGACGTACTAGCATTACTACGTAAAACAATGGGTAGCTTG
CCAGTAGTGCCAGCTATTCCAGAGCAAGCGATTGAAACAACGTTAACGGAATGGGTTAAGTCAGGTGATACGCCTAAAGG
CATCACCATGCTTGATGAAGCTGAGCTTAAATCAATCCAAGAAGACGGCGGTATTGTTCGAGTTAAGAAACAAGAACTAG
AAGCTGATGAGATTAAGAACCACATCGAAGCCAATAAAGTTGTGACTAAACTTCTGATCAACTGGCAAGATCGCATTGAG
TTCATTCTTGCTGAAGATGGCAGCATCAAGCGTCTAAAATTCAGTGATGAACTAAAAGATGAGAACGACGATATTCCTCG
TGAAGATCAAGCTGCACGTTTTGATGCAGACTTCTCTCTACTTTGTGGTGAGTTCAGTGTTTTCCTACCAAACCTATTCG
AATCATTAGGCGGGTTAACTCAACCTAACGCTTAA

Upstream 100 bases:

>100_bases
GTCTCAAACATTTCACTTTTAATTTTTATTGCAGGTATAAGACAAATGGATCGAAATCTCCTATGATGAGCGTCTTCAGA
TAAAGGTATGAGAAATATTT

Downstream 100 bases:

>100_bases
TTGTTCCGATTTGAAGCTCAGGCATCGACGATATCTGAGCTTGTTTTCTTCTCCACCCCGCCTATCAACACCTAACAACA
CTCTTCGCAATACCATTGTT

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MWFKNCLVYRFNRDIDFNADQLEKQLEEFRFTPCGSQDKQKFGWVNAMGRHGDMMTHVSENRILICAKKEEKMLPASVIK
DSLNAKVETLEAESGTPLKKKEKDSLKEDIIIDLLPRAFSRSNFTYALIMPKEGFIVVDASSYKKAEDVLALLRKTMGSL
PVVPAIPEQAIETTLTEWVKSGDTPKGITMLDEAELKSIQEDGGIVRVKKQELEADEIKNHIEANKVVTKLLINWQDRIE
FILAEDGSIKRLKFSDELKDENDDIPREDQAARFDADFSLLCGEFSVFLPNLFESLGGLTQPNA

Sequences:

>Translated_304_residues
MWFKNCLVYRFNRDIDFNADQLEKQLEEFRFTPCGSQDKQKFGWVNAMGRHGDMMTHVSENRILICAKKEEKMLPASVIK
DSLNAKVETLEAESGTPLKKKEKDSLKEDIIIDLLPRAFSRSNFTYALIMPKEGFIVVDASSYKKAEDVLALLRKTMGSL
PVVPAIPEQAIETTLTEWVKSGDTPKGITMLDEAELKSIQEDGGIVRVKKQELEADEIKNHIEANKVVTKLLINWQDRIE
FILAEDGSIKRLKFSDELKDENDDIPREDQAARFDADFSLLCGEFSVFLPNLFESLGGLTQPNA
>Mature_304_residues
MWFKNCLVYRFNRDIDFNADQLEKQLEEFRFTPCGSQDKQKFGWVNAMGRHGDMMTHVSENRILICAKKEEKMLPASVIK
DSLNAKVETLEAESGTPLKKKEKDSLKEDIIIDLLPRAFSRSNFTYALIMPKEGFIVVDASSYKKAEDVLALLRKTMGSL
PVVPAIPEQAIETTLTEWVKSGDTPKGITMLDEAELKSIQEDGGIVRVKKQELEADEIKNHIEANKVVTKLLINWQDRIE
FILAEDGSIKRLKFSDELKDENDDIPREDQAARFDADFSLLCGEFSVFLPNLFESLGGLTQPNA

Specific function: May be involved in recombination

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family

Homologues:

Organism=Escherichia coli, GI1786592, Length=301, Percent_Identity=58.8039867109634, Blast_Score=371, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RDGC_VIBSL (B7VJP8)

Other databases:

- EMBL:   FM954972
- RefSeq:   YP_002416222.1
- ProteinModelPortal:   B7VJP8
- SMR:   B7VJP8
- GeneID:   7160199
- GenomeReviews:   FM954972_GR
- KEGG:   vsp:VS_0578
- HOGENOM:   HBG537402
- OMA:   PCSSQDI
- ProtClustDB:   PRK00321
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_00194
- InterPro:   IPR007476

Pfam domain/function: PF04381 RdgC

EC number: NA

Molecular weight: Translated: 34495; Mature: 34495

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWFKNCLVYRFNRDIDFNADQLEKQLEEFRFTPCGSQDKQKFGWVNAMGRHGDMMTHVSE
CCCHHEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCEEECC
NRILICAKKEEKMLPASVIKDSLNAKVETLEAESGTPLKKKEKDSLKEDIIIDLLPRAFS
CEEEEEECCCCCCCCHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHC
RSNFTYALIMPKEGFIVVDASSYKKAEDVLALLRKTMGSLPVVPAIPEQAIETTLTEWVK
CCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
SGDTPKGITMLDEAELKSIQEDGGIVRVKKQELEADEIKNHIEANKVVTKLLINWQDRIE
CCCCCCCCEEECHHHHHHHHHCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHCHHHHEE
FILAEDGSIKRLKFSDELKDENDDIPREDQAARFDADFSLLCGEFSVFLPNLFESLGGLT
EEEECCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
QPNA
CCCC
>Mature Secondary Structure
MWFKNCLVYRFNRDIDFNADQLEKQLEEFRFTPCGSQDKQKFGWVNAMGRHGDMMTHVSE
CCCHHEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCEEECC
NRILICAKKEEKMLPASVIKDSLNAKVETLEAESGTPLKKKEKDSLKEDIIIDLLPRAFS
CEEEEEECCCCCCCCHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHC
RSNFTYALIMPKEGFIVVDASSYKKAEDVLALLRKTMGSLPVVPAIPEQAIETTLTEWVK
CCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
SGDTPKGITMLDEAELKSIQEDGGIVRVKKQELEADEIKNHIEANKVVTKLLINWQDRIE
CCCCCCCCEEECHHHHHHHHHCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHCHHHHEE
FILAEDGSIKRLKFSDELKDENDDIPREDQAARFDADFSLLCGEFSVFLPNLFESLGGLT
EEEECCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
QPNA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA