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The map label for this gene is yjbQ [H]

Identifier: 218708340

GI number: 218708340

Start: 281642

End: 282067

Strand: Reverse

Name: yjbQ [H]

Synonym: VS_0287

Alternate gene names: 218708340

Gene position: 282067-281642 (Counterclockwise)

Preceding gene: 218708342

Following gene: 218708336

Centisome position: 8.55

GC content: 44.84

Gene sequence:

>426_bases
ATGTGGATTCAGAAGACGATACACCTACACGCACAAAAACGTGGATTTCATCTCATCACTGATGAAATTGAACAACAGAT
ATCCGATATCCATTCACTGTCTGTTGGTTTATTACATCTATTCATTCAGCATACTTCTGCTAGCCTTACGCTAAATGAGA
ACGCAGACCCGACCGTCCGCACTGATATGGAATCACACTTTAATAAGTTTGTGCCCGAACGAGCACCCTACTACAAGCAC
ACCTACGAAGGTGATGATGATATGCCCGCTCACATTAAAGCATCGACACTAGGCACCAGTGTGACAATTCCGATTACCAA
TGGACGTTTAGCTTTGGGGACATGGCAGGGCATTTACTTAGGTGAACACCGAGATTGTGGTGGAAGCCGTACCGTTATTG
CGACCATTCAAGGTGAGTCACGTTAA

Upstream 100 bases:

>100_bases
TAGCGCTCACATCATTAAATGTGAGCGAAACCTGATAAATTCAAGTTCAAAAGATAGCGTTAAACCACTTTTTTTCCAAA
TACATTATAGAGGATGGCGT

Downstream 100 bases:

>100_bases
GTCATCAACAGTGAAATACCGCTTAACAAACATAATGGTAGAAAACAAAAAGGGTGACACAGTTATGTGTCACCCTTTAA
AAATATAAGAGAGTCGAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MWIQKTIHLHAQKRGFHLITDEIEQQISDIHSLSVGLLHLFIQHTSASLTLNENADPTVRTDMESHFNKFVPERAPYYKH
TYEGDDDMPAHIKASTLGTSVTIPITNGRLALGTWQGIYLGEHRDCGGSRTVIATIQGESR

Sequences:

>Translated_141_residues
MWIQKTIHLHAQKRGFHLITDEIEQQISDIHSLSVGLLHLFIQHTSASLTLNENADPTVRTDMESHFNKFVPERAPYYKH
TYEGDDDMPAHIKASTLGTSVTIPITNGRLALGTWQGIYLGEHRDCGGSRTVIATIQGESR
>Mature_141_residues
MWIQKTIHLHAQKRGFHLITDEIEQQISDIHSLSVGLLHLFIQHTSASLTLNENADPTVRTDMESHFNKFVPERAPYYKH
TYEGDDDMPAHIKASTLGTSVTIPITNGRLALGTWQGIYLGEHRDCGGSRTVIATIQGESR

Specific function: Unknown

COG id: COG0432

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0047 family [H]

Homologues:

Organism=Escherichia coli, GI1790491, Length=139, Percent_Identity=62.589928057554, Blast_Score=184, Evalue=3e-48,
Organism=Drosophila melanogaster, GI221476594, Length=140, Percent_Identity=57.1428571428571, Blast_Score=171, Evalue=2e-43,
Organism=Drosophila melanogaster, GI221476589, Length=140, Percent_Identity=57.1428571428571, Blast_Score=169, Evalue=4e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001602 [H]

Pfam domain/function: PF01894 UPF0047 [H]

EC number: NA

Molecular weight: Translated: 15834; Mature: 15834

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS01314 UPF0047

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWIQKTIHLHAQKRGFHLITDEIEQQISDIHSLSVGLLHLFIQHTSASLTLNENADPTVR
CCCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEE
TDMESHFNKFVPERAPYYKHTYEGDDDMPAHIKASTLGTSVTIPITNGRLALGTWQGIYL
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCEEEEEEECEEEE
GEHRDCGGSRTVIATIQGESR
CCCCCCCCCEEEEEEEECCCC
>Mature Secondary Structure
MWIQKTIHLHAQKRGFHLITDEIEQQISDIHSLSVGLLHLFIQHTSASLTLNENADPTVR
CCCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEE
TDMESHFNKFVPERAPYYKHTYEGDDDMPAHIKASTLGTSVTIPITNGRLALGTWQGIYL
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCEEEEEEECEEEE
GEHRDCGGSRTVIATIQGESR
CCCCCCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]