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The map label for this gene is ydbD

Identifier: 218700080

GI number: 218700080

Start: 1792072

End: 1794378

Strand: Direct

Name: ydbD

Synonym: ECIAI39_1711

Alternate gene names: 218700080

Gene position: 1792072-1794378 (Clockwise)

Preceding gene: 218700079

Following gene: 218700081

Centisome position: 34.92

GC content: 43.17

Gene sequence:

>2307_bases
ATGTTTAAGCCCAGGATTTGCAGCTGGATAGGTTTACTTCCCCTGTTTATGCTGAGTCTTCCAGTACAGGCGGACCTTCG
ATGTGTTGCAAATGCAGTTGATATTGAACCATTTTTTTCTGCGGCTACCGCTGAAGATAAACAACAAGTTGAACAAGCTA
TCAACAGTAGCGTGAATCTTGTCCCCTTCGGTTTATCTGCATTGGACTGGAAAGTGCATCGTGGCGATTTAGTGGTAGAC
GGTAATATAGAGAGTAATCAAAAATTGATTGTTCTTGGCAATTTGACAGTCAAAGGTAATATTTCCACTTTCTCTCTTTC
TAATCCATGGGTTATTCTCGGTAACGTGACGGCAACGAATATAGTTACGGATTCACCACTGTTAATTACCGGTTCGATAA
ATGCAAGTGGACTGGTATTTATCGACTCATATTACGATAATCCGTCTACGATTAAGGGGAGTATTAATGCGCGTGGGATA
TTTATCAATGACATAATTGCACCTGTTGTTGCGTCTTCGACAAATAGTGAATTCATGGTCCGTGCGAGTGACAAAAATGA
CACTGAAAATGTCAAAAAAGCGCTGATGATAATAAATCCTGATGCATATTATTGGGATCTAATAAATGATGAAGATGCTC
TGAAAGAAATTTTTAAGCGAAGCAATATTCGCATGGCAGGGAATGTCTGTAATCTGATGAAAAAAGAAGCGCTGTTTCGC
CCTAAGCCTTCTCCTGAGTTAGTGCAGGAATTGCAAATGCTGGATGAAGGCAACGTTGCTGCATTTGAAGGACGAGATAT
TGCGACATTTGATCTTGCCATAATGCGAACTCTCCCAAGGCTTAAAGGAATTTCAGCTAACCTACGCAAACAACTTATTA
ATAGCAATGATGGACAAACGATTGAAAGTATGGCGAGATATATGCCTGACAATGAGATTCTGGAGTTGACCGATCAGCAA
TTGGGTTACCAGCCTGTTGTTCTGGGGTTGCTCGACCGTGAACCGCTCTCTGTCGAAATAATGACGCGAATGAGTCATCT
ACCTGATGGTGTCGGTCCTTTGAATCTTGCGCTACGTGAAAATCTCCCTCTGGATATCGTCATGACTCTGGCGAAAAGAG
ATTGGGATATGATCATTCAGGAGCTTTATAAAGATGCGTGGTTATTGCCCGAATCCATTATTGATGGCTATATCCGCAGT
GATGATTCCTCTATTCGTCAGGTCGGTGCTGGAGGACAACTCACCTACAATCAGGCAATGCAGTTGGCGAACGATTCATC
AAACGATGTTGTCACAAGCTTAGCGTCAAAGCTGGCAGAGATGAAACACCATGGTCAATTGTTGCGGATGACGCCACAAG
AGAGTGACAAAATAGCAGTATATTTATACCAAAAATTCGAGAATGACGATGATCTAATAGGTGCGTTATTTTTAGCGTTG
CCAGATAACTTACAGTTTAATTTTGTTAAAAGGATGGAGAAAAAATCCCCTGCCTACTTTTGCTGTCGGGATATGCAGGT
AATTCACTCTGACGCTGCTTTACAACGGTTATTGACACGTTTCAACGATCCTGAGGGGTGGAGTAATCTGGCGAAAAATC
AGTATCTGAGTACGGCGATGAAACAAAAAATTTGGCACCGCGCTTTATCGCATCGAAAAAATAATCCGAAAGCAGATTCT
GCAGCATATGAAACCAGCGCTGATATGATTTTGTCGGAGCTTATCAGCTACGGTGAAGTTGATGACCAGATGCTATTAAA
TGCCGCCTCTCTGATACGTTCGGAAGGCTGGGACTTTTTAGAGAGTGCATTAGTTAGTTGGGATAATTTACCCGCTGTTG
TCCTCAAGGAATTACAGCAAAATATGCCACGCAATGATATTTGGGCGAAGTTTTTTCTGAGGCAGGAAAACAGCTCTTGT
GCGCAGGTTAACGAAGCGTTACGTGTTTATTATGCACTTGACCCCGATGCGTTAGCGCAACTGGATAAACTGGCAAAACA
ACCGGATCGTATATGGTGGAGTACGCTGGCGAAAAGCAATCTTACATTTTTCAAGTTCGGCGCACTTAACAATCGCCATA
CACCGTCTGCGGCACTGGCGGCAGAAATTGATCCCGAGTGGTGGATTATGGCGATGAATAATCCCCGTTTCCCAGTTGAT
GTATTGAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAAACCTGAACTGGATTTAGTCCGCCAGCT
GGCGCTTAACGGTAAGACACGCGCAATACGGGAACAAGCGATGAGAAAACTTGATGAGTTGCATTGA

Upstream 100 bases:

>100_bases
AGTGTTGTCTACGTTGGATGGTATTTCGCGAGAATAACGAATATACAAAAGGGAAAGATGCATTTCCCTTTTGTTTCTTT
TTTAATGGCATGGAGTGCAT

Downstream 100 bases:

>100_bases
ATAACAGCGTTATGTTTTTAACTATTTGATTAATTGGGGATAATCATTCCTGACGGTGAGTCCCCAATACCTTGATATAT
TCTGAATTTTTAATGAAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 768; Mature: 768

Protein sequence:

>768_residues
MFKPRICSWIGLLPLFMLSLPVQADLRCVANAVDIEPFFSAATAEDKQQVEQAINSSVNLVPFGLSALDWKVHRGDLVVD
GNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVTDSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGI
FINDIIAPVVASSTNSEFMVRASDKNDTENVKKALMIINPDAYYWDLINDEDALKEIFKRSNIRMAGNVCNLMKKEALFR
PKPSPELVQELQMLDEGNVAAFEGRDIATFDLAIMRTLPRLKGISANLRKQLINSNDGQTIESMARYMPDNEILELTDQQ
LGYQPVVLGLLDREPLSVEIMTRMSHLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRS
DDSSIRQVGAGGQLTYNQAMQLANDSSNDVVTSLASKLAEMKHHGQLLRMTPQESDKIAVYLYQKFENDDDLIGALFLAL
PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTAMKQKIWHRALSHRKNNPKADS
AAYETSADMILSELISYGEVDDQMLLNAASLIRSEGWDFLESALVSWDNLPAVVLKELQQNMPRNDIWAKFFLRQENSSC
AQVNEALRVYYALDPDALAQLDKLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPSAALAAEIDPEWWIMAMNNPRFPVD
VLKARLKRDPLLALELVKPELDLVRQLALNGKTRAIREQAMRKLDELH

Sequences:

>Translated_768_residues
MFKPRICSWIGLLPLFMLSLPVQADLRCVANAVDIEPFFSAATAEDKQQVEQAINSSVNLVPFGLSALDWKVHRGDLVVD
GNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVTDSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGI
FINDIIAPVVASSTNSEFMVRASDKNDTENVKKALMIINPDAYYWDLINDEDALKEIFKRSNIRMAGNVCNLMKKEALFR
PKPSPELVQELQMLDEGNVAAFEGRDIATFDLAIMRTLPRLKGISANLRKQLINSNDGQTIESMARYMPDNEILELTDQQ
LGYQPVVLGLLDREPLSVEIMTRMSHLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRS
DDSSIRQVGAGGQLTYNQAMQLANDSSNDVVTSLASKLAEMKHHGQLLRMTPQESDKIAVYLYQKFENDDDLIGALFLAL
PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTAMKQKIWHRALSHRKNNPKADS
AAYETSADMILSELISYGEVDDQMLLNAASLIRSEGWDFLESALVSWDNLPAVVLKELQQNMPRNDIWAKFFLRQENSSC
AQVNEALRVYYALDPDALAQLDKLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPSAALAAEIDPEWWIMAMNNPRFPVD
VLKARLKRDPLLALELVKPELDLVRQLALNGKTRAIREQAMRKLDELH
>Mature_768_residues
MFKPRICSWIGLLPLFMLSLPVQADLRCVANAVDIEPFFSAATAEDKQQVEQAINSSVNLVPFGLSALDWKVHRGDLVVD
GNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVTDSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGI
FINDIIAPVVASSTNSEFMVRASDKNDTENVKKALMIINPDAYYWDLINDEDALKEIFKRSNIRMAGNVCNLMKKEALFR
PKPSPELVQELQMLDEGNVAAFEGRDIATFDLAIMRTLPRLKGISANLRKQLINSNDGQTIESMARYMPDNEILELTDQQ
LGYQPVVLGLLDREPLSVEIMTRMSHLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRS
DDSSIRQVGAGGQLTYNQAMQLANDSSNDVVTSLASKLAEMKHHGQLLRMTPQESDKIAVYLYQKFENDDDLIGALFLAL
PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTAMKQKIWHRALSHRKNNPKADS
AAYETSADMILSELISYGEVDDQMLLNAASLIRSEGWDFLESALVSWDNLPAVVLKELQQNMPRNDIWAKFFLRQENSSC
AQVNEALRVYYALDPDALAQLDKLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPSAALAAEIDPEWWIMAMNNPRFPVD
VLKARLKRDPLLALELVKPELDLVRQLALNGKTRAIREQAMRKLDELH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ykiA [H]

Homologues:

Organism=Escherichia coli, GI87081900, Length=768, Percent_Identity=94.53125, Blast_Score=1480, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 86435; Mature: 86435

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKPRICSWIGLLPLFMLSLPVQADLRCVANAVDIEPFFSAATAEDKQQVEQAINSSVNL
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHCCCCEE
VPFGLSALDWKVHRGDLVVDGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATN
EEECCHHEEEEEECCCEEEECCCCCCCEEEEEEEEEEECCCEEEECCCCEEEEECCEEEE
IVTDSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPVVASSTNSEFMV
EECCCCEEEEECCCCCEEEEEEECCCCCCCEECCCCCCEEEHHHHHHHHHHCCCCCEEEE
RASDKNDTENVKKALMIINPDAYYWDLINDEDALKEIFKRSNIRMAGNVCNLMKKEALFR
EECCCCCHHHHHEEEEEECCCCEEEECCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHCC
PKPSPELVQELQMLDEGNVAAFEGRDIATFDLAIMRTLPRLKGISANLRKQLINSNDGQT
CCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHH
IESMARYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRMSHLPDGVGPLNLALRE
HHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCHHHHC
NLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRSDDSSIRQVGAGGQLTYNQAM
CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHCCCCCEEHHHHH
QLANDSSNDVVTSLASKLAEMKHHGQLLRMTPQESDKIAVYLYQKFENDDDLIGALFLAL
HHCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHC
PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTAM
CCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
KQKIWHRALSHRKNNPKADSAAYETSADMILSELISYGEVDDQMLLNAASLIRSEGWDFL
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHH
ESALVSWDNLPAVVLKELQQNMPRNDIWAKFFLRQENSSCAQVNEALRVYYALDPDALAQ
HHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHEEEEEECHHHHHH
LDKLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPSAALAAEIDPEWWIMAMNNPRFPVD
HHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHEEEECCCCEEEEEECCCCCCHH
VLKARLKRDPLLALELVKPELDLVRQLALNGKTRAIREQAMRKLDELH
HHHHHHCCCCCEEEEHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFKPRICSWIGLLPLFMLSLPVQADLRCVANAVDIEPFFSAATAEDKQQVEQAINSSVNL
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHCCCCEE
VPFGLSALDWKVHRGDLVVDGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATN
EEECCHHEEEEEECCCEEEECCCCCCCEEEEEEEEEEECCCEEEECCCCEEEEECCEEEE
IVTDSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPVVASSTNSEFMV
EECCCCEEEEECCCCCEEEEEEECCCCCCCEECCCCCCEEEHHHHHHHHHHCCCCCEEEE
RASDKNDTENVKKALMIINPDAYYWDLINDEDALKEIFKRSNIRMAGNVCNLMKKEALFR
EECCCCCHHHHHEEEEEECCCCEEEECCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHCC
PKPSPELVQELQMLDEGNVAAFEGRDIATFDLAIMRTLPRLKGISANLRKQLINSNDGQT
CCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHH
IESMARYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRMSHLPDGVGPLNLALRE
HHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCHHHHC
NLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRSDDSSIRQVGAGGQLTYNQAM
CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHCCCCCEEHHHHH
QLANDSSNDVVTSLASKLAEMKHHGQLLRMTPQESDKIAVYLYQKFENDDDLIGALFLAL
HHCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHC
PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTAM
CCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
KQKIWHRALSHRKNNPKADSAAYETSADMILSELISYGEVDDQMLLNAASLIRSEGWDFL
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHH
ESALVSWDNLPAVVLKELQQNMPRNDIWAKFFLRQENSSCAQVNEALRVYYALDPDALAQ
HHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHEEEEEECHHHHHH
LDKLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPSAALAAEIDPEWWIMAMNNPRFPVD
HHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHEEEECCCCEEEEEECCCCCCHH
VLKARLKRDPLLALELVKPELDLVRQLALNGKTRAIREQAMRKLDELH
HHHHHHCCCCCEEEEHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1665988 [H]