| Definition | Escherichia coli 55989, complete genome. |
|---|---|
| Accession | NC_011748 |
| Length | 5,154,862 |
Click here to switch to the map view.
The map label for this gene is 218696573
Identifier: 218696573
GI number: 218696573
Start: 3351480
End: 3354350
Strand: Direct
Name: 218696573
Synonym: EC55989_3269
Alternate gene names: NA
Gene position: 3351480-3354350 (Clockwise)
Preceding gene: 218696572
Following gene: 218696574
Centisome position: 65.02
GC content: 46.57
Gene sequence:
>2871_bases ATGAGCCAGAATAACGCCGTTAAAATTGTCAATCGAGTTAGCGCACGACTGTCTCTGCGCGATCCGCAGGATGAATCATT GTGCATCTTATGTGACGTGCTGGAACAACTCGATCTCAGTAAAGATCCCGATCTTAATCGCTGGCTGGCGGTGCTGCATC AGCAATACCCAACGGTAAAAGGATTTGAACGCGCCTTTCCTTCACTCTGCTTTGCACTGGCGACCGGCGTGGGCAAAACG CGCTTAATGGGGGCGATGATTGCCTGGTTATACCTAACCGGGCGCAGTCGTCATTTTTTCGTGCTGGCTCCTAACCTGAC CATCTATGAAAAACTCAAGATGGATTTTTTACCCGGTTCGCCAAAATACGTTTTTCAGGGTATCCCTGAACTGGCGCAAA CGCCGCCAGTATTAATCACTGGCGATGACTATCAGGAAGGGCGAGGTGTCCGTCTGGACTATGCGATTGCCGAAAGCAAA ACGGGCGATCTGTTTGGTGGCGAAACCGCGCCACATATTAACATCTTCAATATTTCTAAAATCAACGCGCTGGATAATGC CAAAGGGGCCGCTAAATCCAAAGTCGCTAAAATCCGGCGGATTCAGGAATACGTGGGAGAGTCTTATTTCAGCTATCTGG CAAACTTGCCGGATTTAGTCGTTTTAATGGATGAAGCCCACCGTTACTACGCCAGCGCGGGCGCGCAGGCGCTTAACGAT CTGAATCCAGTATTGGGTATTGAATTAACCGCCACGCCGAAAACGGTGGGCGCAAATCCCCGTGATTTCAGAAACATAAT TTATCACTATCCTCTTTCGCGAGCGCTGAAAGATGGATATGTCAAAATTCCTGCCGTTGCCACGCGCAAAGACTTCCGGG CTGCAAATTATTCCGAAGAACAACTGGAAAAAATTAAGCTGGAAGACGGTATTCACCATCATGAATACGTAAAAACGGAA CTGACCAGCTTCGCCAATAATACCGGCAACAAACTGGTTAAACCGTTTATGTTGGTCGTAGCGCAGGATACCGATCATGC GGACAGGCTGAAAGCCCGTATTGAGCATGACGAATTTTTTAACGGCGCGTACAGAGGCAAGGTGATCACCGTCCACTCTA ACCTGACGGGCGAAGAATCAGAAGAAACCATGCAGCGACTGTTGACTGTCGAGCATGACAAAGACACTGAAATCGTCATT CACGTCAACAAGTTGAAAGAGGGCTGGGACGTTACCAATCTCTACACAATAGTTCCGTTACGTGCATCAGCCTCCGAAAT TCTGACTGAACAGACCATAGGCCGGGGACTTCGCCTGCCCTACGGAAAAAGAACTGGCGTCGAGGCCGTTGATCGCCTGA CCATCATTGCTCATGACCGTTTTCAGGAGATTATCGATCGCGCCAATAATGATGACTCGATAATCAAAAAAGTTCTCTAT ATCGGGCTGGATGATGATGAGAATGGTATTCCAGAAGTAAAACCTCAGCAAATTATCGTTCCCTCAATGGCTGAATATCT GCTGGGTAATCAAATTATCGATAATAGTGGGTTGCAGCTTTGTGAAGATAAAGCGATATACCGAACAAACTCAACACCAA AACCGATACTCGGTACAGAAACGGAACGTAAAGTCGCCGAGCTCACGTTTAAAGTCGTCTCCGAAGAAGCAAAACGGTTA ACCAGCAGCCAGCAACTCAGTATGCCAGAAGTCAAAGCGAACGTAACACGGCGGGTGCAACAAGCCTTGCGCGAATGGGA AGTGACTCAACACCAAACCTCTCCCTCTTCTACACAAATCGATCTGGCTGAAATGATTGAAGAGCAACCTGAACAACCGA GTTTCCCCTCAATGGAAGACGCAGAGGTTCAGCAACTGGTCGGAACGATCACCGAAAAACTGATGGAATATACTATTGAT ATTCCTCGAATCGTGGTTTTGCCAGAACGTGAAGTCAATTACGGGTTTAATGATTTCAACCTCTCCGGACTGGATCGCAT TGCGCTCAAACCAGGCAGTAAAGAGCTTCTTCTGACGCATCTGGAGAATAACGAACAGCGGACAATCAGTTGGCAGGAAG GCGGTGAAACGGAAGAACGGTTAGAAAACTATCTCATTCGTTATCTGCTCGACCATGATGAAATTGACTACGATGAACAT GCCGATATGCTTTATAAACTTGCCGGACAAATGGTGAGCCATTTGTGCAGTTATCAGCCGCAGGAAGATGCAGAATCCGT TCTGAAAAATGCAGGCCGTCAACTGGCAGAATTTATGTGGGCACAAATCAAACAAAATATGTGGACAACGCCAACGGGTT ATACCGGACGCATAACTCAGGGATTCGATGTTATACATCCAGCCACATTCAATTTTGCCGGAAATGAAAAACCGAGAGAT TTTCGTGTCGCCATTCCCGGTGGTGAAAAAAATAAAGTTCGCCAGATGATTTTCACTGGTTTCAATAAATGCTGCTACCC TTATCAGAAATTTGACTCCGTCGATGGGGAACTTCGTCTGGCGCAAATACTGGAGAACGATGCTTCAGTGGTGCGCTGGA TGAAGCCTCGCCCTGGACAATTCCGTATTGAATATACTAATGGTAGAAACTATGAGCCGGATTTTGTGGTTGAAATGAAC AATGGGTACTGTCTTATTGAACCGAAAAAAGCCAATGAAATCGATACTCCTGAAGTTCAGGCCAAAACACGGGCAGCCCT GCGCTGGTGTGAATTTGCCAATCAGAATGCAGCAAAGAATGGCGGAAAAGTATGGAGATATGCGCTTATCCCACATAATG AAATTGAATTAAGTCGCACAGTTTCAGGGTTAATGGCTGATTTTATGATGACAAATAGTTTATCAGCATAG
Upstream 100 bases:
>100_bases GGGATCAGGACGACTATAGCTTTACGCTAAACGTTCTCTCTGATTCAGAACAGCCTGACGATATTGACTACGACGAAGAC ACCGAAGACGAAGAATAATT
Downstream 100 bases:
>100_bases TAGCAGCCCACCGGAGTTGTAATTAAAAACCATTCCGAGACATTGCGTTGCTGTTTCGGGATGGTTTAGCATAAACAATG AGTAAAAAATGAATACAGAA
Product: putative PstII restriction-modification enzyme Res subunit
Products: NA
Alternate protein names: Type III Restriction Res Subunit; Type III Restriction- Helicase Subunit; DNA Restriction- System Restriction; Type III Restriction; PstII Restriction- Res Subunit; Type III Restriction-; Type III Restriction- System R Subunit
Number of amino acids: Translated: 956; Mature: 955
Protein sequence:
>956_residues MSQNNAVKIVNRVSARLSLRDPQDESLCILCDVLEQLDLSKDPDLNRWLAVLHQQYPTVKGFERAFPSLCFALATGVGKT RLMGAMIAWLYLTGRSRHFFVLAPNLTIYEKLKMDFLPGSPKYVFQGIPELAQTPPVLITGDDYQEGRGVRLDYAIAESK TGDLFGGETAPHINIFNISKINALDNAKGAAKSKVAKIRRIQEYVGESYFSYLANLPDLVVLMDEAHRYYASAGAQALND LNPVLGIELTATPKTVGANPRDFRNIIYHYPLSRALKDGYVKIPAVATRKDFRAANYSEEQLEKIKLEDGIHHHEYVKTE LTSFANNTGNKLVKPFMLVVAQDTDHADRLKARIEHDEFFNGAYRGKVITVHSNLTGEESEETMQRLLTVEHDKDTEIVI HVNKLKEGWDVTNLYTIVPLRASASEILTEQTIGRGLRLPYGKRTGVEAVDRLTIIAHDRFQEIIDRANNDDSIIKKVLY IGLDDDENGIPEVKPQQIIVPSMAEYLLGNQIIDNSGLQLCEDKAIYRTNSTPKPILGTETERKVAELTFKVVSEEAKRL TSSQQLSMPEVKANVTRRVQQALREWEVTQHQTSPSSTQIDLAEMIEEQPEQPSFPSMEDAEVQQLVGTITEKLMEYTID IPRIVVLPEREVNYGFNDFNLSGLDRIALKPGSKELLLTHLENNEQRTISWQEGGETEERLENYLIRYLLDHDEIDYDEH ADMLYKLAGQMVSHLCSYQPQEDAESVLKNAGRQLAEFMWAQIKQNMWTTPTGYTGRITQGFDVIHPATFNFAGNEKPRD FRVAIPGGEKNKVRQMIFTGFNKCCYPYQKFDSVDGELRLAQILENDASVVRWMKPRPGQFRIEYTNGRNYEPDFVVEMN NGYCLIEPKKANEIDTPEVQAKTRAALRWCEFANQNAAKNGGKVWRYALIPHNEIELSRTVSGLMADFMMTNSLSA
Sequences:
>Translated_956_residues MSQNNAVKIVNRVSARLSLRDPQDESLCILCDVLEQLDLSKDPDLNRWLAVLHQQYPTVKGFERAFPSLCFALATGVGKT RLMGAMIAWLYLTGRSRHFFVLAPNLTIYEKLKMDFLPGSPKYVFQGIPELAQTPPVLITGDDYQEGRGVRLDYAIAESK TGDLFGGETAPHINIFNISKINALDNAKGAAKSKVAKIRRIQEYVGESYFSYLANLPDLVVLMDEAHRYYASAGAQALND LNPVLGIELTATPKTVGANPRDFRNIIYHYPLSRALKDGYVKIPAVATRKDFRAANYSEEQLEKIKLEDGIHHHEYVKTE LTSFANNTGNKLVKPFMLVVAQDTDHADRLKARIEHDEFFNGAYRGKVITVHSNLTGEESEETMQRLLTVEHDKDTEIVI HVNKLKEGWDVTNLYTIVPLRASASEILTEQTIGRGLRLPYGKRTGVEAVDRLTIIAHDRFQEIIDRANNDDSIIKKVLY IGLDDDENGIPEVKPQQIIVPSMAEYLLGNQIIDNSGLQLCEDKAIYRTNSTPKPILGTETERKVAELTFKVVSEEAKRL TSSQQLSMPEVKANVTRRVQQALREWEVTQHQTSPSSTQIDLAEMIEEQPEQPSFPSMEDAEVQQLVGTITEKLMEYTID IPRIVVLPEREVNYGFNDFNLSGLDRIALKPGSKELLLTHLENNEQRTISWQEGGETEERLENYLIRYLLDHDEIDYDEH ADMLYKLAGQMVSHLCSYQPQEDAESVLKNAGRQLAEFMWAQIKQNMWTTPTGYTGRITQGFDVIHPATFNFAGNEKPRD FRVAIPGGEKNKVRQMIFTGFNKCCYPYQKFDSVDGELRLAQILENDASVVRWMKPRPGQFRIEYTNGRNYEPDFVVEMN NGYCLIEPKKANEIDTPEVQAKTRAALRWCEFANQNAAKNGGKVWRYALIPHNEIELSRTVSGLMADFMMTNSLSA >Mature_955_residues SQNNAVKIVNRVSARLSLRDPQDESLCILCDVLEQLDLSKDPDLNRWLAVLHQQYPTVKGFERAFPSLCFALATGVGKTR LMGAMIAWLYLTGRSRHFFVLAPNLTIYEKLKMDFLPGSPKYVFQGIPELAQTPPVLITGDDYQEGRGVRLDYAIAESKT GDLFGGETAPHINIFNISKINALDNAKGAAKSKVAKIRRIQEYVGESYFSYLANLPDLVVLMDEAHRYYASAGAQALNDL NPVLGIELTATPKTVGANPRDFRNIIYHYPLSRALKDGYVKIPAVATRKDFRAANYSEEQLEKIKLEDGIHHHEYVKTEL TSFANNTGNKLVKPFMLVVAQDTDHADRLKARIEHDEFFNGAYRGKVITVHSNLTGEESEETMQRLLTVEHDKDTEIVIH VNKLKEGWDVTNLYTIVPLRASASEILTEQTIGRGLRLPYGKRTGVEAVDRLTIIAHDRFQEIIDRANNDDSIIKKVLYI GLDDDENGIPEVKPQQIIVPSMAEYLLGNQIIDNSGLQLCEDKAIYRTNSTPKPILGTETERKVAELTFKVVSEEAKRLT SSQQLSMPEVKANVTRRVQQALREWEVTQHQTSPSSTQIDLAEMIEEQPEQPSFPSMEDAEVQQLVGTITEKLMEYTIDI PRIVVLPEREVNYGFNDFNLSGLDRIALKPGSKELLLTHLENNEQRTISWQEGGETEERLENYLIRYLLDHDEIDYDEHA DMLYKLAGQMVSHLCSYQPQEDAESVLKNAGRQLAEFMWAQIKQNMWTTPTGYTGRITQGFDVIHPATFNFAGNEKPRDF RVAIPGGEKNKVRQMIFTGFNKCCYPYQKFDSVDGELRLAQILENDASVVRWMKPRPGQFRIEYTNGRNYEPDFVVEMNN GYCLIEPKKANEIDTPEVQAKTRAALRWCEFANQNAAKNGGKVWRYALIPHNEIELSRTVSGLMADFMMTNSLSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 108362; Mature: 108231
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQNNAVKIVNRVSARLSLRDPQDESLCILCDVLEQLDLSKDPDLNRWLAVLHQQYPTVK CCCCCHHHHHHHHHHHEECCCCCCCCEEHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC GFERAFPSLCFALATGVGKTRLMGAMIAWLYLTGRSRHFFVLAPNLTIYEKLKMDFLPGS HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEECCCCEEEEECCCCEEEHHHHHHCCCCC PKYVFQGIPELAQTPPVLITGDDYQEGRGVRLDYAIAESKTGDLFGGETAPHINIFNISK CHHHHCCCHHHHCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECHH INALDNAKGAAKSKVAKIRRIQEYVGESYFSYLANLPDLVVLMDEAHRYYASAGAQALND CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHC LNPVLGIELTATPKTVGANPRDFRNIIYHYPLSRALKDGYVKIPAVATRKDFRAANYSEE CCCHHEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHCCCCEECCEEECCHHHCCCCCCHH QLEKIKLEDGIHHHEYVKTELTSFANNTGNKLVKPFMLVVAQDTDHADRLKARIEHDEFF HHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHCEEEEEECCCCHHHHHHHHHCHHHHC NGAYRGKVITVHSNLTGEESEETMQRLLTVEHDKDTEIVIHVNKLKEGWDVTNLYTIVPL CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEEEEE RASASEILTEQTIGRGLRLPYGKRTGVEAVDRLTIIAHDRFQEIIDRANNDDSIIKKVLY CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHEEEHHHHHHHHHCCCCCHHHHHHHHH IGLDDDENGIPEVKPQQIIVPSMAEYLLGNQIIDNSGLQLCEDKAIYRTNSTPKPILGTE EECCCCCCCCCCCCCCEEEHHHHHHHHHCCCEECCCCCCCCCCCCEEECCCCCCCCCCCC TERKVAELTFKVVSEEAKRLTSSQQLSMPEVKANVTRRVQQALREWEVTQHQTSPSSTQI HHHHHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC DLAEMIEEQPEQPSFPSMEDAEVQQLVGTITEKLMEYTIDIPRIVVLPEREVNYGFNDFN HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC LSGLDRIALKPGSKELLLTHLENNEQRTISWQEGGETEERLENYLIRYLLDHDEIDYDEH CCCCCEEEECCCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHH ADMLYKLAGQMVSHLCSYQPQEDAESVLKNAGRQLAEFMWAQIKQNMWTTPTGYTGRITQ HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC GFDVIHPATFNFAGNEKPRDFRVAIPGGEKNKVRQMIFTGFNKCCYPYQKFDSVDGELRL CCEEECCCEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHH AQILENDASVVRWMKPRPGQFRIEYTNGRNYEPDFVVEMNNGYCLIEPKKANEIDTPEVQ HHHHHCCHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCHH AKTRAALRWCEFANQNAAKNGGKVWRYALIPHNEIELSRTVSGLMADFMMTNSLSA HHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SQNNAVKIVNRVSARLSLRDPQDESLCILCDVLEQLDLSKDPDLNRWLAVLHQQYPTVK CCCCHHHHHHHHHHHEECCCCCCCCEEHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC GFERAFPSLCFALATGVGKTRLMGAMIAWLYLTGRSRHFFVLAPNLTIYEKLKMDFLPGS HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEECCCCEEEEECCCCEEEHHHHHHCCCCC PKYVFQGIPELAQTPPVLITGDDYQEGRGVRLDYAIAESKTGDLFGGETAPHINIFNISK CHHHHCCCHHHHCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECHH INALDNAKGAAKSKVAKIRRIQEYVGESYFSYLANLPDLVVLMDEAHRYYASAGAQALND CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHC LNPVLGIELTATPKTVGANPRDFRNIIYHYPLSRALKDGYVKIPAVATRKDFRAANYSEE CCCHHEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHCCCCEECCEEECCHHHCCCCCCHH QLEKIKLEDGIHHHEYVKTELTSFANNTGNKLVKPFMLVVAQDTDHADRLKARIEHDEFF HHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHCEEEEEECCCCHHHHHHHHHCHHHHC NGAYRGKVITVHSNLTGEESEETMQRLLTVEHDKDTEIVIHVNKLKEGWDVTNLYTIVPL CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEEEEE RASASEILTEQTIGRGLRLPYGKRTGVEAVDRLTIIAHDRFQEIIDRANNDDSIIKKVLY CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHEEEHHHHHHHHHCCCCCHHHHHHHHH IGLDDDENGIPEVKPQQIIVPSMAEYLLGNQIIDNSGLQLCEDKAIYRTNSTPKPILGTE EECCCCCCCCCCCCCCEEEHHHHHHHHHCCCEECCCCCCCCCCCCEEECCCCCCCCCCCC TERKVAELTFKVVSEEAKRLTSSQQLSMPEVKANVTRRVQQALREWEVTQHQTSPSSTQI HHHHHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC DLAEMIEEQPEQPSFPSMEDAEVQQLVGTITEKLMEYTIDIPRIVVLPEREVNYGFNDFN HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC LSGLDRIALKPGSKELLLTHLENNEQRTISWQEGGETEERLENYLIRYLLDHDEIDYDEH CCCCCEEEECCCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHH ADMLYKLAGQMVSHLCSYQPQEDAESVLKNAGRQLAEFMWAQIKQNMWTTPTGYTGRITQ HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC GFDVIHPATFNFAGNEKPRDFRVAIPGGEKNKVRQMIFTGFNKCCYPYQKFDSVDGELRL CCEEECCCEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHH AQILENDASVVRWMKPRPGQFRIEYTNGRNYEPDFVVEMNNGYCLIEPKKANEIDTPEVQ HHHHHCCHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCHH AKTRAALRWCEFANQNAAKNGGKVWRYALIPHNEIELSRTVSGLMADFMMTNSLSA HHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA