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The map label for this gene is ygcO

Identifier: 218696366

GI number: 218696366

Start: 3109907

End: 3110167

Strand: Direct

Name: ygcO

Synonym: EC55989_3041

Alternate gene names: 218696366

Gene position: 3109907-3110167 (Clockwise)

Preceding gene: 218696365

Following gene: 218696367

Centisome position: 60.33

GC content: 55.94

Gene sequence:

>261_bases
ATGTCTGTAGCCCGTAATCTCTGGCGCGTTGCTGATGCGCCGCACATTGTTCCGGCTGACTCCGTTGAGCGCCAGACGGC
AGAACGGTTGATTAGCGCCTGTCCGGCAGGTCTTTTTTCGCTCACACCGGAAGGTGACTTACGTATTGACTATCGCAGTT
GCCTGGAGTGTGGCACCTGCCGTTTGCTGTGCGACGAATCAACACTACAACAGTGGCGCTATCCGCCTTCCGGATTCGGC
ATCACCTACCGCTTTGGATAA

Upstream 100 bases:

>100_bases
AGGGTGATAAACCTGTTCCACCGCTGCGCCAGTTATTCTGGCATCATTTACGTCGTCACGGCCTGTGGCATCTGGCGGGC
GATGTTATCAGGAGTCTGCG

Downstream 100 bases:

>100_bases
ATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCC
TGCAACTGGCAATCGATTCT

Product: putative 4Fe-4S cluster-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 85

Protein sequence:

>86_residues
MSVARNLWRVADAPHIVPADSVERQTAERLISACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFG
ITYRFG

Sequences:

>Translated_86_residues
MSVARNLWRVADAPHIVPADSVERQTAERLISACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFG
ITYRFG
>Mature_85_residues
SVARNLWRVADAPHIVPADSVERQTAERLISACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGI
TYRFG

Specific function: Could be a 3Fe-4S cluster-containing protein. Probably participates in a redox process with ygcN, ygcQ and ygcR [H]

COG id: COG2440

COG function: function code C; Ferredoxin-like protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]

Homologues:

Organism=Escherichia coli, GI87082156, Length=86, Percent_Identity=97.6744186046512, Blast_Score=177, Evalue=1e-46,
Organism=Escherichia coli, GI1786228, Length=75, Percent_Identity=48, Blast_Score=86, Evalue=5e-19,
Organism=Escherichia coli, GI1787992, Length=87, Percent_Identity=40.2298850574713, Blast_Score=84, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR012206 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9636; Mature: 9505

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
5.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVARNLWRVADAPHIVPADSVERQTAERLISACPAGLFSLTPEGDLRIDYRSCLECGTC
CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCEEECHHHHHCCCCE
RLLCDESTLQQWRYPPSGFGITYRFG
EEEECCHHHHHCCCCCCCCCEEEECC
>Mature Secondary Structure 
SVARNLWRVADAPHIVPADSVERQTAERLISACPAGLFSLTPEGDLRIDYRSCLECGTC
CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCEEECHHHHHCCCCE
RLLCDESTLQQWRYPPSGFGITYRFG
EEEECCHHHHHCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]