Definition | Escherichia coli 55989, complete genome. |
---|---|
Accession | NC_011748 |
Length | 5,154,862 |
Click here to switch to the map view.
The map label for this gene is insB
Identifier: 218695570
GI number: 218695570
Start: 2224087
End: 2224590
Strand: Reverse
Name: insB
Synonym: EC55989_2191
Alternate gene names: 218695570
Gene position: 2224590-2224087 (Counterclockwise)
Preceding gene: 218695571
Following gene: 218695568
Centisome position: 43.16
GC content: 54.96
Gene sequence:
>504_bases ATGCCGGGCAACTGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTACGTCACTTAAAAAACTCAGGCCGCAGTCGGT AACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGCTATGTCGGGGCTAAAT CGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACGATG GCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGA ATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGC AGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTAT CTGAACATAAAACACTATCAATAA
Upstream 100 bases:
>100_bases GCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGAT ATGGCCATGAATGGCGTTGG
Downstream 100 bases:
>100_bases GTTGGAGTCATTACCTAGTTAGGGTAGTCACTATATTTGCGACTGAGCTGGTCGCTATTTTTAACCAGGCTGGAAAATTG AGTCAATATATCGAAAGCGG
Product: IS1 transposase InsAB'
Products: NA
Alternate protein names: IS1a [H]
Number of amino acids: Translated: 167; Mature: 166
Protein sequence:
>167_residues MPGNCPHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTM ATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY LNIKHYQ
Sequences:
>Translated_167_residues MPGNCPHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTM ATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY LNIKHYQ >Mature_166_residues PGNCPHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMA TLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYL NIKHYQ
Specific function: Absolutely required for transposition of IS1 [H]
COG id: COG1662
COG function: function code L; Transposase and inactivated derivatives, IS1 family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 27 family [H]
Homologues:
Organism=Escherichia coli, GI1789853, Length=167, Percent_Identity=98.8023952095808, Blast_Score=344, Evalue=2e-96, Organism=Escherichia coli, GI1788203, Length=167, Percent_Identity=98.8023952095808, Blast_Score=344, Evalue=2e-96, Organism=Escherichia coli, GI1786203, Length=167, Percent_Identity=98.8023952095808, Blast_Score=344, Evalue=2e-96, Organism=Escherichia coli, GI1787223, Length=167, Percent_Identity=97.0059880239521, Blast_Score=338, Evalue=1e-94, Organism=Escherichia coli, GI1786470, Length=167, Percent_Identity=97.0059880239521, Blast_Score=337, Evalue=4e-94, Organism=Escherichia coli, GI1786459, Length=167, Percent_Identity=97.0059880239521, Blast_Score=337, Evalue=4e-94,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005063 [H]
Pfam domain/function: PF03400 Transposase_27 [H]
EC number: NA
Molecular weight: Translated: 19650; Mature: 19519
Theoretical pI: Translated: 10.65; Mature: 10.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGNCPHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLF CCCCCCCCCCCCCHHHHHHHHCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHH YAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKR HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHCCHHHHHHHH YTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ HHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure PGNCPHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLF CCCCCCCCCCCCHHHHHHHHCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHH YAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKR HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHCCHHHHHHHH YTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ HHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 375010; 1849492; 1630901; 9278503 [H]