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The map label for this gene is ybcM

Identifier: 218695539

GI number: 218695539

Start: 2196536

End: 2197333

Strand: Reverse

Name: ybcM

Synonym: EC55989_2154

Alternate gene names: 218695539

Gene position: 2197333-2196536 (Counterclockwise)

Preceding gene: 218695540

Following gene: 218695535

Centisome position: 42.63

GC content: 37.34

Gene sequence:

>798_bases
ATGCTGGCAAAAGATAAGACTAACCTAAAGATTGAAGAAATACGGATGCATAAACATCATGAGATTCACAGGGTTAAGCC
TCTTATGCCAGCTTTATGTCGTATCCGTCAGGGAAAAAAAGTTATCAATTGGGAGACGCATAGTCTAACTGTTGATAATA
ATCAGATAATATTATTTCCCTGTGGATATGAATTTTATATTGCGAATTATCCAGAAGCAGGTCTTTATCTTGCAGAAATG
CTTTATTATCCCATTGATCTAATTGAAAAGTTTCAAAAATTTTATGCGATAACTGATCAAATTCGTAACACGACAGGTTT
CTGCTTACCTCAGAACCCCGAGTTAATATATTGTTGGGAGCAACTAAAAACATCTATTTCCCGAGGCTTCTCAACGCAAA
TTCAGGAACACTTAGCAATGGGCGTTCTACTTTCATTAGGAGCACATCATGTTAATTGTTTACTTTTATCAGATAGTAAA
CAATCATTAATAAGTCGTTGTTATAACCTAATGCTATCCGAACCTGGAACAAAATGGACAGCAAACAAGGTAGCGAGATA
TCTCTACATTTCTGTTTCCACATTGCATCGCCGTCTGGCAAGCGAGGGAGTAAGTTTTCAAAGTATATTGGACGACGTGA
GGTTAAATAATGCGTTGTCTGCTATACAAACGACAGTAAAACCCATCAGCGAGATTGCCAGGGAAAATGGTTACAAGTGT
CCTTCTCGTTTTACTGAAAGGTTCCATAATCGTTTTAAGATAACACCAAGAGAGCTAAGAAAAGCGTCCAGAGAGTAA

Upstream 100 bases:

>100_bases
TTCTAATTCCAGCGGAGCGTTAGTTGGTTATATGTTTAATGCCAATAAAATTGCAACCGCTGAGATAACACCAGTTTATG
AGATAAAGTAGGGTAAGAGT

Downstream 100 bases:

>100_bases
AAGTATTTTATGAAGGAGCAACAGCATCGATTTTTATTTTGGAAAATAAATACGGCATACTCAACCTATTGGAGTCTGAA
CAATCCGGTGACTTCTGCGC

Product: putative DNA-binding transcriptional regulator; DLP12 prophage

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MLAKDKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHSLTVDNNQIILFPCGYEFYIANYPEAGLYLAEM
LYYPIDLIEKFQKFYAITDQIRNTTGFCLPQNPELIYCWEQLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSK
QSLISRCYNLMLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC
PSRFTERFHNRFKITPRELRKASRE

Sequences:

>Translated_265_residues
MLAKDKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHSLTVDNNQIILFPCGYEFYIANYPEAGLYLAEM
LYYPIDLIEKFQKFYAITDQIRNTTGFCLPQNPELIYCWEQLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSK
QSLISRCYNLMLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC
PSRFTERFHNRFKITPRELRKASRE
>Mature_265_residues
MLAKDKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHSLTVDNNQIILFPCGYEFYIANYPEAGLYLAEM
LYYPIDLIEKFQKFYAITDQIRNTTGFCLPQNPELIYCWEQLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSK
QSLISRCYNLMLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC
PSRFTERFHNRFKITPRELRKASRE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786758, Length=265, Percent_Identity=92.0754716981132, Blast_Score=512, Evalue=1e-146,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30766; Mature: 30766

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAKDKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHSLTVDNNQIILFP
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCEEEEEE
CGYEFYIANYPEAGLYLAEMLYYPIDLIEKFQKFYAITDQIRNTTGFCLPQNPELIYCWE
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHH
QLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSKQSLISRCYNLMLSEPGTKWT
HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCHH
ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PSRFTERFHNRFKITPRELRKASRE
HHHHHHHHHHCCCCCHHHHHHHCCC
>Mature Secondary Structure
MLAKDKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHSLTVDNNQIILFP
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCEEEEEE
CGYEFYIANYPEAGLYLAEMLYYPIDLIEKFQKFYAITDQIRNTTGFCLPQNPELIYCWE
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHH
QLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSKQSLISRCYNLMLSEPGTKWT
HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCHH
ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PSRFTERFHNRFKITPRELRKASRE
HHHHHHHHHHCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]