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The map label for this gene is xynB [H]

Identifier: 218692466

GI number: 218692466

Start: 4872346

End: 4873176

Strand: Direct

Name: xynB [H]

Synonym: ECED1_4914

Alternate gene names: 218692466

Gene position: 4872346-4873176 (Clockwise)

Preceding gene: 218692465

Following gene: 218692467

Centisome position: 93.53

GC content: 40.43

Gene sequence:

>831_bases
ATGCTATCAGGGAATAAAAAAATGATTCATTACAGGGAGAATATATATTCTCTTGATAATTATGAGCGTTACATAACTGA
CAGTTCGCTATTTGAGAATACTGGCGATGGCATAATATATACAGGTATTGTGCCCCTTATTACAGTTGTTGAGCCTGTTG
TATCTAATCAACATAGTGTGCTGATTATACCTGGAGGTGGATACAGGAGGATTGTTTATGAAAGAGAGGGACTTGATGTT
GGCAGATGGATAGCAGGTCAGGGATATACGGCATTTATTCTTTCTTACAGAATGCCCTCCGTTAATGGTTATTATTCCTT
TGCAGATGCGAAGAATGCCCTGAACTTTATTTCTTACTGGGCCGGAATGTCGGAGAGAACATTTAAGAGTGTTGGGTGTA
TGGGGTTTTCGGCAGGTGGTCATCTTGCTGGATATATTACTCATCTCCATTATGAGGAAGAGACTTCTGTGCGTCCTGAC
TGGATGGCTCTGATATATCCAGTTATATCTCTTGACAGGAGTATTGCTCATCAGGGATGCCGGAAACGTCTTCTGGATGC
AGGTGAAAGTGAATATTCAGCCAGTCTTGAAAATAGTGTTACAGAGTATATGCCACCAGTCTTTATTGTGCATGCAACAG
ATGATAAGGATGTTCCAGTTATTCATTCTCTGAGATATTTTAACTCTATTCGGGATAAGGGACATCATGCAGAAGCTCAT
TTTTTTGATAAGGGGGGTCATGGATTTGGTGTATCCGGAAAAAATGGATATCCGATAGAAAAATGGCAAAGCCTGCTTCT
GGAATGGCTTGCGGAACATAAGTTTCATTGA

Upstream 100 bases:

>100_bases
ACAGAGATGGATCCATCCAGAAGCTGCGCTTGAATATGATACTGTCGATGGAAAACCTTTTTATGGAGCAAGAAAAAAGA
ATGTTGCAGAAGAATAACGG

Downstream 100 bases:

>100_bases
GAAATCAAATTACAAGTGATAAATATATTTAATGATGAGGCATTTATGAAAAAATATTATCCACTATTAACTGTAATTCT
TCTTGGTTTACCTTTGTGCT

Product: hypothetical protein

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MLSGNKKMIHYRENIYSLDNYERYITDSSLFENTGDGIIYTGIVPLITVVEPVVSNQHSVLIIPGGGYRRIVYEREGLDV
GRWIAGQGYTAFILSYRMPSVNGYYSFADAKNALNFISYWAGMSERTFKSVGCMGFSAGGHLAGYITHLHYEEETSVRPD
WMALIYPVISLDRSIAHQGCRKRLLDAGESEYSASLENSVTEYMPPVFIVHATDDKDVPVIHSLRYFNSIRDKGHHAEAH
FFDKGGHGFGVSGKNGYPIEKWQSLLLEWLAEHKFH

Sequences:

>Translated_276_residues
MLSGNKKMIHYRENIYSLDNYERYITDSSLFENTGDGIIYTGIVPLITVVEPVVSNQHSVLIIPGGGYRRIVYEREGLDV
GRWIAGQGYTAFILSYRMPSVNGYYSFADAKNALNFISYWAGMSERTFKSVGCMGFSAGGHLAGYITHLHYEEETSVRPD
WMALIYPVISLDRSIAHQGCRKRLLDAGESEYSASLENSVTEYMPPVFIVHATDDKDVPVIHSLRYFNSIRDKGHHAEAH
FFDKGGHGFGVSGKNGYPIEKWQSLLLEWLAEHKFH
>Mature_276_residues
MLSGNKKMIHYRENIYSLDNYERYITDSSLFENTGDGIIYTGIVPLITVVEPVVSNQHSVLIIPGGGYRRIVYEREGLDV
GRWIAGQGYTAFILSYRMPSVNGYYSFADAKNALNFISYWAGMSERTFKSVGCMGFSAGGHLAGYITHLHYEEETSVRPD
WMALIYPVISLDRSIAHQGCRKRLLDAGESEYSASLENSVTEYMPPVFIVHATDDKDVPVIHSLRYFNSIRDKGHHAEAH
FFDKGGHGFGVSGKNGYPIEKWQSLLLEWLAEHKFH

Specific function: B.fibrisolvens is located in the rumen of ruminant animals, where it contributes to the animal's digestion of plant material by hydrolyzing hemicellulose with its xylanases [H]

COG id: COG0657

COG function: function code I; Esterase/lipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013094
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07859 Abhydrolase_3; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 31219; Mature: 31219

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSGNKKMIHYRENIYSLDNYERYITDSSLFENTGDGIIYTGIVPLITVVEPVVSNQHSV
CCCCCCEEEEECCCHHCCCCHHHHHCCCHHHHCCCCCEEEECHHHHHHHHHHHHCCCCEE
LIIPGGGYRRIVYEREGLDVGRWIAGQGYTAFILSYRMPSVNGYYSFADAKNALNFISYW
EEEECCCEEEEEEECCCCCCCCEECCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHH
AGMSERTFKSVGCMGFSAGGHLAGYITHLHYEEETSVRPDWMALIYPVISLDRSIAHQGC
CCCCHHHHHHHCCCEECCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RKRLLDAGESEYSASLENSVTEYMPPVFIVHATDDKDVPVIHSLRYFNSIRDKGHHAEAH
HHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEE
FFDKGGHGFGVSGKNGYPIEKWQSLLLEWLAEHKFH
EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLSGNKKMIHYRENIYSLDNYERYITDSSLFENTGDGIIYTGIVPLITVVEPVVSNQHSV
CCCCCCEEEEECCCHHCCCCHHHHHCCCHHHHCCCCCEEEECHHHHHHHHHHHHCCCCEE
LIIPGGGYRRIVYEREGLDVGRWIAGQGYTAFILSYRMPSVNGYYSFADAKNALNFISYW
EEEECCCEEEEEEECCCCCCCCEECCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHH
AGMSERTFKSVGCMGFSAGGHLAGYITHLHYEEETSVRPDWMALIYPVISLDRSIAHQGC
CCCCHHHHHHHCCCEECCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RKRLLDAGESEYSASLENSVTEYMPPVFIVHATDDKDVPVIHSLRYFNSIRDKGHHAEAH
HHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEE
FFDKGGHGFGVSGKNGYPIEKWQSLLLEWLAEHKFH
EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1909424 [H]