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The map label for this gene is rhaS [H]

Identifier: 218692190

GI number: 218692190

Start: 4549130

End: 4549966

Strand: Direct

Name: rhaS [H]

Synonym: ECED1_4607

Alternate gene names: 218692190

Gene position: 4549130-4549966 (Clockwise)

Preceding gene: 218692185

Following gene: 218692191

Centisome position: 87.32

GC content: 51.25

Gene sequence:

>837_bases
ATGACCGTATTACATAGTGTGGATTTTTTTCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGA
TTTTCCTGAACATCATCATGATTTTTATGAAATTGTGATTGTCGAACATGGCACGGGTATTCATGTATTTAATGGGCAGC
CCTATACCATCACCGGTGGGATGGTCTGTTTCGTACGCGATCATGATCGGCATCTGTATGAACATACCGATAATCTGTGT
CTGACCAATGTGCTGTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCAGGA
TGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGGAACAGC
AGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTATTTATGCAATTATTGCTCTTGCTGCGTAAAAGC
AGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGA
GGTGAATTGGGACGCTGTGGCGGATCAATTTTCTCTTTCATTGCGTACGCTGCATCGCCAGCTTAAGCAGCAAACGGGGC
TGACGCCTCAGCGTTACCTGAACCGCCTGCGACTGATGAAAGCCCGACATCTGCTACGCCACAGCGAGGCCAGCGTTACT
GACATCGCCTATCGCTGCGGATTCAGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGAGAGTTTAACTGGTCACCGCG
TGATATTCGTCAGGGACGGGATGGTTTTCTGCAATAA

Upstream 100 bases:

>100_bases
AAAATCGACGTTTTTTACGTGGTTTTCCGTCGAAAATTTAAGGTAAGAACCTGACCTCGTGATTACTATTTCGCCGTGTT
GACGACATCAGGAGGCCAGT

Downstream 100 bases:

>100_bases
CGCGAATCTCCTCAACGTATTTGTACGCCATATTGCGAATAATCAACTTCGTTCTCTGGCCGAGGTAGCCACGGTGGCGC
ATCAGTTAAAACTTCTCAAA

Product: transcriptional activator RhaS

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MTVLHSVDFFPSGNASVAIEPRLPQADFPEHHHDFYEIVIVEHGTGIHVFNGQPYTITGGMVCFVRDHDRHLYEHTDNLC
LTNVLYRSPDRFQFLAGLNQLLPQEQDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKS
SLQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASVT
DIAYRCGFSDSNHFSTLFRREFNWSPRDIRQGRDGFLQ

Sequences:

>Translated_278_residues
MTVLHSVDFFPSGNASVAIEPRLPQADFPEHHHDFYEIVIVEHGTGIHVFNGQPYTITGGMVCFVRDHDRHLYEHTDNLC
LTNVLYRSPDRFQFLAGLNQLLPQEQDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKS
SLQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASVT
DIAYRCGFSDSNHFSTLFRREFNWSPRDIRQGRDGFLQ
>Mature_277_residues
TVLHSVDFFPSGNASVAIEPRLPQADFPEHHHDFYEIVIVEHGTGIHVFNGQPYTITGGMVCFVRDHDRHLYEHTDNLCL
TNVLYRSPDRFQFLAGLNQLLPQEQDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKSS
LQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASVTD
IAYRCGFSDSNHFSTLFRREFNWSPRDIRQGRDGFLQ

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=278, Percent_Identity=98.9208633093525, Blast_Score=567, Evalue=1e-163,
Organism=Escherichia coli, GI171474011, Length=266, Percent_Identity=35.7142857142857, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1788725, Length=164, Percent_Identity=29.2682926829268, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32387; Mature: 32256

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVLHSVDFFPSGNASVAIEPRLPQADFPEHHHDFYEIVIVEHGTGIHVFNGQPYTITGG
CCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCEEEECC
MVCFVRDHDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQLLPQEQDGQYPSHWRVNHSV
EEEEEECCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
LQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKSSLQENLENSASRLNLLLAWL
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASVT
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHH
DIAYRCGFSDSNHFSTLFRREFNWSPRDIRQGRDGFLQ
HHHHHCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCC
>Mature Secondary Structure 
TVLHSVDFFPSGNASVAIEPRLPQADFPEHHHDFYEIVIVEHGTGIHVFNGQPYTITGG
CEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCEEEECC
MVCFVRDHDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQLLPQEQDGQYPSHWRVNHSV
EEEEEECCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
LQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKSSLQENLENSASRLNLLLAWL
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASVT
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHH
DIAYRCGFSDSNHFSTLFRREFNWSPRDIRQGRDGFLQ
HHHHHCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA