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The map label for this gene is yiaD

Identifier: 218691843

GI number: 218691843

Start: 4159167

End: 4159826

Strand: Direct

Name: yiaD

Synonym: ECED1_4237

Alternate gene names: 218691843

Gene position: 4159167-4159826 (Clockwise)

Preceding gene: 218691841

Following gene: 218691844

Centisome position: 79.84

GC content: 57.27

Gene sequence:

>660_bases
ATGAAGAAACGTGTTTATCTTATTGCCGCCGTAGTGAGTGGCGCTCTGGCGGTATCTGGCTGTACAACTAACCCTTACAC
CGGCGAACGCGAAGCAGGTAAATCTGCTATCGGCGCAGGTCTGGGCTCTCTCGTTGGTGCGGGTATTGGTGCGCTCTCTT
CTTCGAAGAAAGATCGCGGTAAAGGCGCGCTCATTGGCGCAGCAGCAGGCGCAGCTCTGGGCGGCGGCGTTGGTTATTAC
ATGGATGTGCAGGAAGCGAAGCTGCGTGACAAAATGCGCGGCACTGGTGTTAGCGTAACCCGCAGCGGGGATAACATTAT
CCTCAATATGCCGAACAATGTGACCTTCGACAGCAGCAGCGCAACCCTGAAACCGGCGGGCGCTAACACCCTGACCGGCG
TGGCAATGGTACTGAAAGAGTATCCGAAAACGGCGGTTAACGTGATTGGTTATACCGACAGCACGGGGGGTCACGACCTG
AACATGCGTCTCTCCCAGCAGCGTGCGGATTCCGTTGCCAGCGCGTTGATCACCCAGGGCGTGGACGCCAGCCGCATCCG
TACTCAGGGCCTTGGCCCGGCTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAA
TTACCTTAAGCCCACTGTAA

Upstream 100 bases:

>100_bases
AATTTCCGAGTATTCCCAGGAATAATCTTCATGTTCACGCGGCATAATCTCCCGCCACGGAACCCGTGGCAAAGAATAAA
AAGGTTATTAAGGATTAACA

Downstream 100 bases:

>100_bases
TCCCTTTCATGTCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGC
CTTATCAGTGAATGGAGAGA

Product: putative outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MKKRVYLIAAVVSGALAVSGCTTNPYTGEREAGKSAIGAGLGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYY
MDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDL
NMRLSQQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSPL

Sequences:

>Translated_219_residues
MKKRVYLIAAVVSGALAVSGCTTNPYTGEREAGKSAIGAGLGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYY
MDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDL
NMRLSQQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSPL
>Mature_219_residues
MKKRVYLIAAVVSGALAVSGCTTNPYTGEREAGKSAIGAGLGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYY
MDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDL
NMRLSQQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSPL

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain

Homologues:

Organism=Escherichia coli, GI48994946, Length=219, Percent_Identity=100, Blast_Score=433, Evalue=1e-123,
Organism=Escherichia coli, GI1787191, Length=120, Percent_Identity=35.8333333333333, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1788957, Length=120, Percent_Identity=34.1666666666667, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YIAD_ECOLI (P37665)

Other databases:

- EMBL:   U00039
- EMBL:   U00096
- EMBL:   AP009048
- EMBL:   M34827
- PIR:   S47773
- RefSeq:   AP_004242.1
- RefSeq:   YP_026228.1
- PDB:   2K1S
- PDBsum:   2K1S
- ProteinModelPortal:   P37665
- SMR:   P37665
- IntAct:   P37665
- STRING:   P37665
- EnsemblBacteria:   EBESCT00000002483
- EnsemblBacteria:   EBESCT00000018099
- GeneID:   948075
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW5657
- KEGG:   eco:b3552
- EchoBASE:   EB2180
- EcoGene:   EG12271
- eggNOG:   COG2885
- GeneTree:   EBGT00050000009918
- HOGENOM:   HBG751251
- OMA:   NYMDQQE
- ProtClustDB:   PRK10510
- BioCyc:   EcoCyc:EG12271-MONOMER
- Genevestigator:   P37665
- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- Gene3D:   G3DSA:3.30.1330.60
- PRINTS:   PR01023
- PRINTS:   PR01021

Pfam domain/function: PF00691 OmpA; SSF103088 OmpA/MotB_C

EC number: NA

Molecular weight: Translated: 22197; Mature: 22197

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: PS01068 OMPA_1; PS51123 OMPA_2; PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x24b2e804)-; HASH(0x24f10470)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRVYLIAAVVSGALAVSGCTTNPYTGEREAGKSAIGAGLGSLVGAGIGALSSSKKDRG
CCCEEEEHEEHHHCHHEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
KGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSS
CCEEEECCCCHHHCCCEEEEEEHHHHHHHHHHCCCCEEEEECCCEEEEECCCCEEECCCC
ATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQG
CEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHCC
VDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSPL
CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCH
>Mature Secondary Structure
MKKRVYLIAAVVSGALAVSGCTTNPYTGEREAGKSAIGAGLGSLVGAGIGALSSSKKDRG
CCCEEEEHEEHHHCHHEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
KGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSS
CCEEEECCCCHHHCCCEEEEEEHHHHHHHHHHCCCCEEEEECCCEEEEECCCCEEECCCC
ATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQG
CEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHCC
VDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSPL
CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922