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The map label for this gene is aufC [H]

Identifier: 218691713

GI number: 218691713

Start: 4002182

End: 4004308

Strand: Reverse

Name: aufC [H]

Synonym: ECED1_4098

Alternate gene names: 218691713

Gene position: 4004308-4002182 (Counterclockwise)

Preceding gene: 218691714

Following gene: 218691710

Centisome position: 76.86

GC content: 41.75

Gene sequence:

>2127_bases
ATGAACCTAAAGCTCAAAAGATGCGAATATTGGATGGCGGCACAAAAGCAGATGAAACGGGTTGTGCCGCTTCTTCTGGT
TATTATGCCTGCATGTTCAATCGCGGGAATGCGCTTTAACCCTGCTTTTCTGTCGGGTGATACTGAAGCTGTTGCTGACT
TATCCCGCTTCGAGAAAGGGATGACTTATCTTCCTGGTAGCTATGAAGTCGAAGTTTGGGTCAATGATTCCCCTTTACTC
TCTCGTACTGTAACTTTTAAAGCAGACGATGAGAATCAACTGATTCCCTGCCTTTCACTTGCTGACTTATTAAGCCTTGG
AATTAACAAAAATGCGCTGCCAGAGCAGGCTTTGGCTTCATCTGAAAATAGTTGCCTTGATTTGCGTATCTGGTTTCCCG
ATGTGCATTACATGCCGGAGCTGGATGCACAGAGACTTAAACTGACCTTTCCACAGGCGATAATAAAACGTGACGCTCGC
GGATATATTCCACCAGAACAGTGGGATAACGGTATTACAGCTTTTTTGCTGAATTATGACTTTTCTGGTAATAACGATCG
TGTTGATTACTCTTCAAATAACTATTATTTAAATCTTCGCGCTGGGATCAATATTGGTGCATGGCGTTTTCGCGATTATT
CAACCTGGAGTCGTGGGAGTAATTCAGCAGGTAAACTGGAGCATATCAGTAGTACGTTGCAGCGCGTTATTATTCCTTTC
AGAAGTGAATTAACGCTAGGAGATACATGGTCATCATCAGATGTTTTCGACAGTGTTAGTATTCGTGGCATAAAACTGGA
ATCTGACGAAAATATGTTGCCCGATAGTCAAAGTGGTTTCGCTCCCACGGTGCGCGGAATTGCGAAAAGTCGCGCTCAGG
TAACAATCAAACAGAATGGTTATGTCATTTATCAAACCTATATGCCGCCGGGACCGTTTGAGATTAGCGATCTTAACCCG
ACATCATCTGCGGGAGATCTGGAAGTTACCATCAAAGAGTCTGATAATTCAGAAACTGTCTATACCGTACCTTATGCCGC
TGTCCCCATCCTGCAACGAGAAGGTCATTTAAAATATTCTACTACGGTTGGCCAATATCGAAGCAATAGCTATAACCAGA
AAAGTCCTTATGTATTTCAGGGGGAATTAATTTGGGGTTTACCCTGGGATATTACGGCTTATGGTGGGGCACAATTCTCT
GAGGATTACCGGGCGTTGGCGCTCGGCCTTGGCCTGAATCTGGGTGTATTTGGTGCAACATCGTTTGATGTTACTCAGGC
TAACAGTTCGCTTGTGGATGGGAGCAAACATCAAGGGCAATCTTATCGTTTTCTTTATTCCAAATCGTTAGTTCAGACAG
GAACAGCATTCCATATTATTGGCTATCGTTATTCAACCCAGGGCTTTTACACTTTAAGTGATACGACATACCAACAAATG
TCAGGGACTGTTGTTGATCCAAAAACGTTAGATGATAAAGATTACGTTTATAACTGGAATGATTTTTATAACTTGCGTTA
TAGCAAACGTGGAAAATTTCAGGCTAGTGTATCGCAACCTTTCGGTAACTACGGGTCTATGTATTTATCGGCTAGTCAGC
AAACATACTGGAATACTGATAAAAAAGATTCTTTATACCAAGTTGGTTATAACAACAGTATTAAGGGTATCTATCTAAAT
GTTGCGTGGAATTACAGTAAATCACCAGGGACAAATGCGGATAAAATTGTCTCGCTAAATGTCTCATTACCTATAAGTAA
TTGGTTATCTTCCACGAATGATGGGCGCTCATCATCGAATGCCATGACTGCAACGTATGGTTATAGTCAGGATAACCACG
GACAGGTAAACCAATATACGGGGGTATCTGGTTCTCTGTTGGAGCAGCATAATCTCAGTTATAACATACAACATGGTTTT
GCTAATCAGGATAATAGCAGTAGTGGTTCTGTTGGTGTTAATTATCGTGGGGCATATGGTTCCTTGAATTCCGCCTACAG
TTACGATAATGAAGGTAATCAACAAATAAACTATGGCATCAGTGGTGCTCTTGTTGTACATGAAAATGGTCTTACGTTGA
GTCAACCATTAGGTGAAACTAATGTTTTGATAAAAGCGCCTGGGTAA

Upstream 100 bases:

>100_bases
TACTTATCAAACAATTAATGACTTTGGCGCTACGACGGAGCGGCAGAAAGGAATAATGCAGTAACAACGGAATAGTTCAG
ATGCAACACAGGTCAGGGAT

Downstream 100 bases:

>100_bases
TGACTCCAACTTACTGATAGTGTTTTATGTTCAGATAATGCCCGATGACCTTGTCATGCAGCTCCACCGATTTTGAGAAC
GACAGTGACTTCCGTCCCAG

Product: putative outer membrane export usher protein AufC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 708; Mature: 708

Protein sequence:

>708_residues
MNLKLKRCEYWMAAQKQMKRVVPLLLVIMPACSIAGMRFNPAFLSGDTEAVADLSRFEKGMTYLPGSYEVEVWVNDSPLL
SRTVTFKADDENQLIPCLSLADLLSLGINKNALPEQALASSENSCLDLRIWFPDVHYMPELDAQRLKLTFPQAIIKRDAR
GYIPPEQWDNGITAFLLNYDFSGNNDRVDYSSNNYYLNLRAGINIGAWRFRDYSTWSRGSNSAGKLEHISSTLQRVIIPF
RSELTLGDTWSSSDVFDSVSIRGIKLESDENMLPDSQSGFAPTVRGIAKSRAQVTIKQNGYVIYQTYMPPGPFEISDLNP
TSSAGDLEVTIKESDNSETVYTVPYAAVPILQREGHLKYSTTVGQYRSNSYNQKSPYVFQGELIWGLPWDITAYGGAQFS
EDYRALALGLGLNLGVFGATSFDVTQANSSLVDGSKHQGQSYRFLYSKSLVQTGTAFHIIGYRYSTQGFYTLSDTTYQQM
SGTVVDPKTLDDKDYVYNWNDFYNLRYSKRGKFQASVSQPFGNYGSMYLSASQQTYWNTDKKDSLYQVGYNNSIKGIYLN
VAWNYSKSPGTNADKIVSLNVSLPISNWLSSTNDGRSSSNAMTATYGYSQDNHGQVNQYTGVSGSLLEQHNLSYNIQHGF
ANQDNSSSGSVGVNYRGAYGSLNSAYSYDNEGNQQINYGISGALVVHENGLTLSQPLGETNVLIKAPG

Sequences:

>Translated_708_residues
MNLKLKRCEYWMAAQKQMKRVVPLLLVIMPACSIAGMRFNPAFLSGDTEAVADLSRFEKGMTYLPGSYEVEVWVNDSPLL
SRTVTFKADDENQLIPCLSLADLLSLGINKNALPEQALASSENSCLDLRIWFPDVHYMPELDAQRLKLTFPQAIIKRDAR
GYIPPEQWDNGITAFLLNYDFSGNNDRVDYSSNNYYLNLRAGINIGAWRFRDYSTWSRGSNSAGKLEHISSTLQRVIIPF
RSELTLGDTWSSSDVFDSVSIRGIKLESDENMLPDSQSGFAPTVRGIAKSRAQVTIKQNGYVIYQTYMPPGPFEISDLNP
TSSAGDLEVTIKESDNSETVYTVPYAAVPILQREGHLKYSTTVGQYRSNSYNQKSPYVFQGELIWGLPWDITAYGGAQFS
EDYRALALGLGLNLGVFGATSFDVTQANSSLVDGSKHQGQSYRFLYSKSLVQTGTAFHIIGYRYSTQGFYTLSDTTYQQM
SGTVVDPKTLDDKDYVYNWNDFYNLRYSKRGKFQASVSQPFGNYGSMYLSASQQTYWNTDKKDSLYQVGYNNSIKGIYLN
VAWNYSKSPGTNADKIVSLNVSLPISNWLSSTNDGRSSSNAMTATYGYSQDNHGQVNQYTGVSGSLLEQHNLSYNIQHGF
ANQDNSSSGSVGVNYRGAYGSLNSAYSYDNEGNQQINYGISGALVVHENGLTLSQPLGETNVLIKAPG
>Mature_708_residues
MNLKLKRCEYWMAAQKQMKRVVPLLLVIMPACSIAGMRFNPAFLSGDTEAVADLSRFEKGMTYLPGSYEVEVWVNDSPLL
SRTVTFKADDENQLIPCLSLADLLSLGINKNALPEQALASSENSCLDLRIWFPDVHYMPELDAQRLKLTFPQAIIKRDAR
GYIPPEQWDNGITAFLLNYDFSGNNDRVDYSSNNYYLNLRAGINIGAWRFRDYSTWSRGSNSAGKLEHISSTLQRVIIPF
RSELTLGDTWSSSDVFDSVSIRGIKLESDENMLPDSQSGFAPTVRGIAKSRAQVTIKQNGYVIYQTYMPPGPFEISDLNP
TSSAGDLEVTIKESDNSETVYTVPYAAVPILQREGHLKYSTTVGQYRSNSYNQKSPYVFQGELIWGLPWDITAYGGAQFS
EDYRALALGLGLNLGVFGATSFDVTQANSSLVDGSKHQGQSYRFLYSKSLVQTGTAFHIIGYRYSTQGFYTLSDTTYQQM
SGTVVDPKTLDDKDYVYNWNDFYNLRYSKRGKFQASVSQPFGNYGSMYLSASQQTYWNTDKKDSLYQVGYNNSIKGIYLN
VAWNYSKSPGTNADKIVSLNVSLPISNWLSSTNDGRSSSNAMTATYGYSQDNHGQVNQYTGVSGSLLEQHNLSYNIQHGF
ANQDNSSSGSVGVNYRGAYGSLNSAYSYDNEGNQQINYGISGALVVHENGLTLSQPLGETNVLIKAPG

Specific function: Could be involved in the export and assembly of the putative ycbQ fimbrial subunit across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1787172, Length=678, Percent_Identity=49.8525073746313, Blast_Score=656, Evalue=0.0,
Organism=Escherichia coli, GI1790772, Length=730, Percent_Identity=45.6164383561644, Blast_Score=630, Evalue=0.0,
Organism=Escherichia coli, GI1786744, Length=695, Percent_Identity=45.6115107913669, Blast_Score=596, Evalue=1e-171,
Organism=Escherichia coli, GI1789533, Length=700, Percent_Identity=36.2857142857143, Blast_Score=422, Evalue=1e-119,
Organism=Escherichia coli, GI1786332, Length=705, Percent_Identity=33.1914893617021, Blast_Score=338, Evalue=5e-94,
Organism=Escherichia coli, GI1788427, Length=702, Percent_Identity=30.4843304843305, Blast_Score=303, Evalue=2e-83,
Organism=Escherichia coli, GI87081778, Length=581, Percent_Identity=31.4974182444062, Blast_Score=233, Evalue=3e-62,
Organism=Escherichia coli, GI1789610, Length=653, Percent_Identity=25.4211332312404, Blast_Score=116, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 78732; Mature: 78732

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKLKRCEYWMAAQKQMKRVVPLLLVIMPACSIAGMRFNPAFLSGDTEAVADLSRFEKG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHCC
MTYLPGSYEVEVWVNDSPLLSRTVTFKADDENQLIPCLSLADLLSLGINKNALPEQALAS
CEECCCCEEEEEEECCCCCEEEEEEEEECCCCCEEHHHHHHHHHHCCCCCCCCCHHHHHC
SENSCLDLRIWFPDVHYMPELDAQRLKLTFPQAIIKRDARGYIPPEQWDNGITAFLLNYD
CCCCEEEEEEECCCCCCCCCCCCCEEEEECCHHHHHCCCCCCCCHHHHCCCEEEEEEEEE
FSGNNDRVDYSSNNYYLNLRAGINIGAWRFRDYSTWSRGSNSAGKLEHISSTLQRVIIPF
CCCCCCEEEECCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
RSELTLGDTWSSSDVFDSVSIRGIKLESDENMLPDSQSGFAPTVRGIAKSRAQVTIKQNG
CCCEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEECC
YVIYQTYMPPGPFEISDLNPTSSAGDLEVTIKESDNSETVYTVPYAAVPILQREGHLKYS
EEEEEECCCCCCEEECCCCCCCCCCEEEEEEEECCCCCEEEECCHHEEEEEECCCCEEEE
TTVGQYRSNSYNQKSPYVFQGELIWGLPWDITAYGGAQFSEDYRALALGLGLNLGVFGAT
EEHHHHCCCCCCCCCCEEEECEEEECCCCEEEECCCCCCCCCCEEEEEECCCCEEEEECC
SFDVTQANSSLVDGSKHQGQSYRFLYSKSLVQTGTAFHIIGYRYSTQGFYTLSDTTYQQM
EEEEECCCCCCCCCCCCCCCCEEEEEEHHHHHCCCEEEEEEEEEECCEEEEECCCCHHHH
SGTVVDPKTLDDKDYVYNWNDFYNLRYSKRGKFQASVSQPFGNYGSMYLSASQQTYWNTD
CCCEECCCCCCCCCEEECCCCEEEEEECCCCCEEEECCCCCCCCCCEEEEECCCEECCCC
KKDSLYQVGYNNSIKGIYLNVAWNYSKSPGTNADKIVSLNVSLPISNWLSSTNDGRSSSN
CCCCEEEECCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCHHHHHCCCCCCCCCCC
AMTATYGYSQDNHGQVNQYTGVSGSLLEQHNLSYNIQHGFANQDNSSSGSVGVNYRGAYG
CEEEEECCCCCCCCCCEEECCCCCCHHHHCCCEEEEEECCCCCCCCCCCCEEEEEECCCC
SLNSAYSYDNEGNQQINYGISGALVVHENGLTLSQPLGETNVLIKAPG
CCCCCCCCCCCCCCEEEECCEEEEEEEECCCEECCCCCCCEEEEECCC
>Mature Secondary Structure
MNLKLKRCEYWMAAQKQMKRVVPLLLVIMPACSIAGMRFNPAFLSGDTEAVADLSRFEKG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHCC
MTYLPGSYEVEVWVNDSPLLSRTVTFKADDENQLIPCLSLADLLSLGINKNALPEQALAS
CEECCCCEEEEEEECCCCCEEEEEEEEECCCCCEEHHHHHHHHHHCCCCCCCCCHHHHHC
SENSCLDLRIWFPDVHYMPELDAQRLKLTFPQAIIKRDARGYIPPEQWDNGITAFLLNYD
CCCCEEEEEEECCCCCCCCCCCCCEEEEECCHHHHHCCCCCCCCHHHHCCCEEEEEEEEE
FSGNNDRVDYSSNNYYLNLRAGINIGAWRFRDYSTWSRGSNSAGKLEHISSTLQRVIIPF
CCCCCCEEEECCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
RSELTLGDTWSSSDVFDSVSIRGIKLESDENMLPDSQSGFAPTVRGIAKSRAQVTIKQNG
CCCEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEECC
YVIYQTYMPPGPFEISDLNPTSSAGDLEVTIKESDNSETVYTVPYAAVPILQREGHLKYS
EEEEEECCCCCCEEECCCCCCCCCCEEEEEEEECCCCCEEEECCHHEEEEEECCCCEEEE
TTVGQYRSNSYNQKSPYVFQGELIWGLPWDITAYGGAQFSEDYRALALGLGLNLGVFGAT
EEHHHHCCCCCCCCCCEEEECEEEECCCCEEEECCCCCCCCCCEEEEEECCCCEEEEECC
SFDVTQANSSLVDGSKHQGQSYRFLYSKSLVQTGTAFHIIGYRYSTQGFYTLSDTTYQQM
EEEEECCCCCCCCCCCCCCCCEEEEEEHHHHHCCCEEEEEEEEEECCEEEEECCCCHHHH
SGTVVDPKTLDDKDYVYNWNDFYNLRYSKRGKFQASVSQPFGNYGSMYLSASQQTYWNTD
CCCEECCCCCCCCCEEECCCCEEEEEECCCCCEEEECCCCCCCCCCEEEEECCCEECCCC
KKDSLYQVGYNNSIKGIYLNVAWNYSKSPGTNADKIVSLNVSLPISNWLSSTNDGRSSSN
CCCCEEEECCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCHHHHHCCCCCCCCCCC
AMTATYGYSQDNHGQVNQYTGVSGSLLEQHNLSYNIQHGFANQDNSSSGSVGVNYRGAYG
CEEEEECCCCCCCCCCEEECCCCCCHHHHCCCEEEEEECCCCCCCCCCCCEEEEEECCCC
SLNSAYSYDNEGNQQINYGISGALVVHENGLTLSQPLGETNVLIKAPG
CCCCCCCCCCCCCCEEEECCEEEEEEEECCCEECCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]