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The map label for this gene is aufD [H]

Identifier: 218691710

GI number: 218691710

Start: 4000836

End: 4001432

Strand: Reverse

Name: aufD [H]

Synonym: ECED1_4095

Alternate gene names: 218691710

Gene position: 4001432-4000836 (Counterclockwise)

Preceding gene: 218691713

Following gene: 218691709

Centisome position: 76.81

GC content: 39.03

Gene sequence:

>597_bases
TTGGCAGCATTACCCAACTCTGGAGTGCCGCTAATGAATTTAATATTCTCTAAATATTCTGTATTTTTTATTCTTTTCGT
TTTTTTTGCTTTTCCGCTCTCAGGGCAGGCCAATGATTCAGTTGTTGTTACATTTACTGGGATTTTGTTGGCAAAAAGCT
GTGACATTACTACCGGAAGTAAAGATCAGTCGGTAAAAATGGGCACTTATGATGCTAATGAATTTTTAAATGTAGGTGAT
GTTTCTCCGAGTCAAACGTTTACGATTAATGTACAAGGATGCCCGACTGCAAAAAGTACAGTTTATAGTTCTGGTGTGAG
CGCCAATGTGCGGTTTACTGGTGATGCAGATGCCATTAATAGCGCATTACTGCGTCTATCCGCCGGTGCAGATAGTGCGA
CTGGACTGGGAATAGAAATATTGGATAACAATGATGTGGCGATTGCCATTAATGGTGAATCAGGTTTTCGTGATTTAGTG
TTAAATGAAAACGGTGATGCTAATTTGACGTTTAAACTTCGCTATAAATCAACTCAGGAAAATGTACATGCCGGGCAAGC
AAATGCTCTGTTGTATTTTGATATCGATTATCAGTGA

Upstream 100 bases:

>100_bases
TTACGCACCACGCCTTCAGTAGCGGAGCAGGAAGGACATCTGATGGAAATGGAAGCCACGCAAGCACCTTAAAATCACCA
TCATACACTAAATCAGTAAG

Downstream 100 bases:

>100_bases
GGGAGATATGAAGATATTCATTAGTTTATTTTTGTTTATAATATCAACAAGTTCTTTTGCTGATGATATCACTCATGCCG
GAGTAGTTCGTATTGAAGGG

Product: putative minor fimbrial subunit AufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MAALPNSGVPLMNLIFSKYSVFFILFVFFAFPLSGQANDSVVVTFTGILLAKSCDITTGSKDQSVKMGTYDANEFLNVGD
VSPSQTFTINVQGCPTAKSTVYSSGVSANVRFTGDADAINSALLRLSAGADSATGLGIEILDNNDVAIAINGESGFRDLV
LNENGDANLTFKLRYKSTQENVHAGQANALLYFDIDYQ

Sequences:

>Translated_198_residues
MAALPNSGVPLMNLIFSKYSVFFILFVFFAFPLSGQANDSVVVTFTGILLAKSCDITTGSKDQSVKMGTYDANEFLNVGD
VSPSQTFTINVQGCPTAKSTVYSSGVSANVRFTGDADAINSALLRLSAGADSATGLGIEILDNNDVAIAINGESGFRDLV
LNENGDANLTFKLRYKSTQENVHAGQANALLYFDIDYQ
>Mature_197_residues
AALPNSGVPLMNLIFSKYSVFFILFVFFAFPLSGQANDSVVVTFTGILLAKSCDITTGSKDQSVKMGTYDANEFLNVGDV
SPSQTFTINVQGCPTAKSTVYSSGVSANVRFTGDADAINSALLRLSAGADSATGLGIEILDNNDVAIAINGESGFRDLVL
NENGDANLTFKLRYKSTQENVHAGQANALLYFDIDYQ

Specific function: Fimbriae (also called pili), polar filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometers and numbering 100-300 per cell, enable bacteria to colonize the epithelium of specific host organs [H]

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1787174, Length=191, Percent_Identity=29.3193717277487, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87082421, Length=188, Percent_Identity=29.2553191489362, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787781, Length=158, Percent_Identity=31.0126582278481, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87081805, Length=178, Percent_Identity=30.3370786516854, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1790773, Length=178, Percent_Identity=30.3370786516854, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081753, Length=165, Percent_Identity=35.7575757575758, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 21066; Mature: 20935

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAALPNSGVPLMNLIFSKYSVFFILFVFFAFPLSGQANDSVVVTFTGILLAKSCDITTGS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCCCC
KDQSVKMGTYDANEFLNVGDVSPSQTFTINVQGCPTAKSTVYSSGVSANVRFTGDADAIN
CCCEEEECCCCHHHCEECCCCCCCCEEEEEECCCCCCHHHEECCCCEEEEEECCCHHHHH
SALLRLSAGADSATGLGIEILDNNDVAIAINGESGFRDLVLNENGDANLTFKLRYKSTQE
HEEEEEECCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCC
NVHAGQANALLYFDIDYQ
CCCCCCCCEEEEEEECCC
>Mature Secondary Structure 
AALPNSGVPLMNLIFSKYSVFFILFVFFAFPLSGQANDSVVVTFTGILLAKSCDITTGS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCCCC
KDQSVKMGTYDANEFLNVGDVSPSQTFTINVQGCPTAKSTVYSSGVSANVRFTGDADAIN
CCCEEEECCCCHHHCEECCCCCCCCEEEEEECCCCCCHHHEECCCCEEEEEECCCHHHHH
SALLRLSAGADSATGLGIEILDNNDVAIAINGESGFRDLVLNENGDANLTFKLRYKSTQE
HEEEEEECCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCC
NVHAGQANALLYFDIDYQ
CCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1982455 [H]