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The map label for this gene is yhfX [H]

Identifier: 218691657

GI number: 218691657

Start: 3942027

End: 3943190

Strand: Reverse

Name: yhfX [H]

Synonym: ECED1_4039

Alternate gene names: 218691657

Gene position: 3943190-3942027 (Counterclockwise)

Preceding gene: 218691658

Following gene: 218691656

Centisome position: 75.69

GC content: 54.47

Gene sequence:

>1164_bases
ATGTTTGTAGAAGCATTGAAACGCCAGAATCCGGCGCTGATTTCCGCCGCACTAAGTTTGTGGCAGCAGGGCAAGATCGC
CCCGGACAGTTGGGTGATCGACGTGGATCAAGTTCTGGAAAACGGCAAGCGGCTGATTGAGACGGCGCGGCTTTACGGCA
TTGAACTGTATCTGATGACCAAACAATTCGGTCGTAATCCGTGGCTGGCAGAAAAACTGCTGGCTCTGGGCTACAGCGGC
ATTGTGGCGGTGGATTACAAAGAGGCGCGAGTCATGCGCCGCGCCGGTTTGCCGGTAGCGCATCAGGGGCATCTGGTACA
AATCCCTTGTCATCAGGTTTCTGACGCCGTTGAACAGGGAACCGACGTCATCACTGTGTTTACCCTCGACAAAGCGCGGG
AAATTTCTGCGGCAGCGGTGAAGACCGGACGTGTGCAGTCTGTGCTGCTCAAAGTTTATAGCGACGATGATTTTCTTTAT
CCGGGGCAGGAGAGCGGTTTTGTACAGCATTCGCTGCACGAGGTGGTTGCTGAAATCCAGAATCTGCCGGGGCTACATTT
GGCGGGACTTACCCATTTCCCTTGCCTGCTTTGGGATGAGGCTGCCGGGAAAGTTTTGCCGACACCGAATCTTCACACGC
TGGTACAAGCACGGGATCAACTGGCGAAATCTGGTATTGCGATTGAGCAACTGAACGCGCCTTCAGCGACCAGCTGCACG
TCGCTGCCATTGCTGGCGGAATACGGTGTGACTCATACCGAACCCGGTCATGCGCTGACGGGTACTATTCCGGCAAATCA
ACAGGGCGATCAGCCTGAACGTATCGCGATGCTCTGGTTAAGTGAAATCTCCCATCATTTCCGTGGCGACAGCTACTGCT
ACGGCGGCGGTTACTACCGTCGTGGTCACGCGCAACATGCGCTGGTGTTTACGCCAGAAAATCAAAGAATTACTGAAACA
TATCTCAACGCCGTTGATGACAGCAGTATCGACTACACCCTGCCGCTGGCAGGCGAGCATCCGGTAAGCAGTGCAGTGGT
GCTCTGTTTTCGCACGCAGATTTTTATCACCCGTAGCGATGTGGTGCTGGTGTCCGGTATTCACCGTGGCGAACCAGAAA
TAGTTGGTCGTTATGACAGCCTCGGCAACCCTCTGGAGGCGTAA

Upstream 100 bases:

>100_bases
CTAACGAAGAGGTTTGAAGCTCCCGATAAATCCACGTCGTACAACCTAAATATTCAAAAAAATGAATATTTAATTCAAGG
AACAGAAACGAGGCAACAAG

Downstream 100 bases:

>100_bases
ATGGCGCGATTTGTGGTGTTAGTGATTGATAGCTTTGGCGTAGGGGCAATGAAAGATGTCACGTTGGTGCGTCCGCAGGA
TGCCGGGGCGAATACCTGTG

Product: putative amino acid racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MFVEALKRQNPALISAALSLWQQGKIAPDSWVIDVDQVLENGKRLIETARLYGIELYLMTKQFGRNPWLAEKLLALGYSG
IVAVDYKEARVMRRAGLPVAHQGHLVQIPCHQVSDAVEQGTDVITVFTLDKAREISAAAVKTGRVQSVLLKVYSDDDFLY
PGQESGFVQHSLHEVVAEIQNLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLAKSGIAIEQLNAPSATSCT
SLPLLAEYGVTHTEPGHALTGTIPANQQGDQPERIAMLWLSEISHHFRGDSYCYGGGYYRRGHAQHALVFTPENQRITET
YLNAVDDSSIDYTLPLAGEHPVSSAVVLCFRTQIFITRSDVVLVSGIHRGEPEIVGRYDSLGNPLEA

Sequences:

>Translated_387_residues
MFVEALKRQNPALISAALSLWQQGKIAPDSWVIDVDQVLENGKRLIETARLYGIELYLMTKQFGRNPWLAEKLLALGYSG
IVAVDYKEARVMRRAGLPVAHQGHLVQIPCHQVSDAVEQGTDVITVFTLDKAREISAAAVKTGRVQSVLLKVYSDDDFLY
PGQESGFVQHSLHEVVAEIQNLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLAKSGIAIEQLNAPSATSCT
SLPLLAEYGVTHTEPGHALTGTIPANQQGDQPERIAMLWLSEISHHFRGDSYCYGGGYYRRGHAQHALVFTPENQRITET
YLNAVDDSSIDYTLPLAGEHPVSSAVVLCFRTQIFITRSDVVLVSGIHRGEPEIVGRYDSLGNPLEA
>Mature_387_residues
MFVEALKRQNPALISAALSLWQQGKIAPDSWVIDVDQVLENGKRLIETARLYGIELYLMTKQFGRNPWLAEKLLALGYSG
IVAVDYKEARVMRRAGLPVAHQGHLVQIPCHQVSDAVEQGTDVITVFTLDKAREISAAAVKTGRVQSVLLKVYSDDDFLY
PGQESGFVQHSLHEVVAEIQNLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLAKSGIAIEQLNAPSATSCT
SLPLLAEYGVTHTEPGHALTGTIPANQQGDQPERIAMLWLSEISHHFRGDSYCYGGGYYRRGHAQHALVFTPENQRITET
YLNAVDDSSIDYTLPLAGEHPVSSAVVLCFRTQIFITRSDVVLVSGIHRGEPEIVGRYDSLGNPLEA

Specific function: Unknown

COG id: COG3457

COG function: function code E; Predicted amino acid racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789782, Length=387, Percent_Identity=93.7984496124031, Blast_Score=755, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 42501; Mature: 42501

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVEALKRQNPALISAALSLWQQGKIAPDSWVIDVDQVLENGKRLIETARLYGIELYLMT
CCHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHEEEEEEEE
KQFGRNPWLAEKLLALGYSGIVAVDYKEARVMRRAGLPVAHQGHLVQIPCHQVSDAVEQG
HHHCCCCCHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCEECCCCEEEECHHHHHHHHHCC
TDVITVFTLDKAREISAAAVKTGRVQSVLLKVYSDDDFLYPGQESGFVQHSLHEVVAEIQ
CCEEEEEEECCCHHHHHHHHHCCHHHEEHHEEECCCCEECCCCCCCHHHHHHHHHHHHHH
NLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLAKSGIAIEQLNAPSATSCT
CCCCCEECCHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCC
SLPLLAEYGVTHTEPGHALTGTIPANQQGDQPERIAMLWLSEISHHFRGDSYCYGGGYYR
CCCHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCEEE
RGHAQHALVFTPENQRITETYLNAVDDSSIDYTLPLAGEHPVSSAVVLCFRTQIFITRSD
CCCCCEEEEECCCCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHEEEEEEEEEEEECC
VVLVSGIHRGEPEIVGRYDSLGNPLEA
EEEEECCCCCCHHEEECHHCCCCCCCC
>Mature Secondary Structure
MFVEALKRQNPALISAALSLWQQGKIAPDSWVIDVDQVLENGKRLIETARLYGIELYLMT
CCHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHEEEEEEEE
KQFGRNPWLAEKLLALGYSGIVAVDYKEARVMRRAGLPVAHQGHLVQIPCHQVSDAVEQG
HHHCCCCCHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCEECCCCEEEECHHHHHHHHHCC
TDVITVFTLDKAREISAAAVKTGRVQSVLLKVYSDDDFLYPGQESGFVQHSLHEVVAEIQ
CCEEEEEEECCCHHHHHHHHHCCHHHEEHHEEECCCCEECCCCCCCHHHHHHHHHHHHHH
NLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLAKSGIAIEQLNAPSATSCT
CCCCCEECCHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCC
SLPLLAEYGVTHTEPGHALTGTIPANQQGDQPERIAMLWLSEISHHFRGDSYCYGGGYYR
CCCHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCEEE
RGHAQHALVFTPENQRITETYLNAVDDSSIDYTLPLAGEHPVSSAVVLCFRTQIFITRSD
CCCCCEEEEECCCCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHEEEEEEEEEEEECC
VVLVSGIHRGEPEIVGRYDSLGNPLEA
EEEEECCCCCCHHEEECHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]