Click here to switch to the map view.

The map label for this gene is ydiT [H]

Identifier: 218689645

GI number: 218689645

Start: 1860778

End: 1861071

Strand: Direct

Name: ydiT [H]

Synonym: ECED1_1902

Alternate gene names: 218689645

Gene position: 1860778-1861071 (Clockwise)

Preceding gene: 218689644

Following gene: 218689646

Centisome position: 35.72

GC content: 48.3

Gene sequence:

>294_bases
ATGAGCCAGAACGCTACGGTTAACGTCGACATCAAATTAGGCGTCAATAAATTCCATGTTGATGAGGGCCACCCGCATAT
CATTTTGGCGGCAAATCCCGATATCAATGAATTCCGTAAATTAATGAAAGCTTGCCCTGCCGGACTTTATAAGCAGGATG
ACGCAGGAAACATTCATTTCGATTCCGCCGGTTGTCTGGAGTGCGGCACCTGTCGGGTGCTGTGCGGCAACACTATTCTC
AAACAGTGGCAATATCCCGCAGGCACCTTCGGTATTGAATTTCGCTACGGCTAA

Upstream 100 bases:

>100_bases
GCAAACCAAACCAGCCGGTACGCAAAATGATCATGGGACACGCGAAGAAAATTGGGCTGATCAACTTGCTGAAAGATGGC
ATTAAGGGAGCAACCGCGCT

Downstream 100 bases:

>100_bases
TCATGCATCCCACAGGCCCGCATCTCGGGCCTGATGTTCTGTTTCGAGAGTCCAAAATGAAAGTGACATTAACGTTCAAC
GAACAACGTCGTGCGGCGTA

Product: putative 4Fe-4S ferredoxin-type oxidoreductase subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 97; Mature: 96

Protein sequence:

>97_residues
MSQNATVNVDIKLGVNKFHVDEGHPHIILAANPDINEFRKLMKACPAGLYKQDDAGNIHFDSAGCLECGTCRVLCGNTIL
KQWQYPAGTFGIEFRYG

Sequences:

>Translated_97_residues
MSQNATVNVDIKLGVNKFHVDEGHPHIILAANPDINEFRKLMKACPAGLYKQDDAGNIHFDSAGCLECGTCRVLCGNTIL
KQWQYPAGTFGIEFRYG
>Mature_96_residues
SQNATVNVDIKLGVNKFHVDEGHPHIILAANPDINEFRKLMKACPAGLYKQDDAGNIHFDSAGCLECGTCRVLCGNTILK
QWQYPAGTFGIEFRYG

Specific function: Could be a 3Fe-4S cluster-containing protein. Probably participates in a redox process with ydiQ, ydiR and ydiS [H]

COG id: COG2440

COG function: function code C; Ferredoxin-like protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial-type ferredoxin family. FixX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787992, Length=97, Percent_Identity=95.8762886597938, Blast_Score=199, Evalue=4e-53,
Organism=Escherichia coli, GI1786228, Length=94, Percent_Identity=62.7659574468085, Blast_Score=135, Evalue=7e-34,
Organism=Escherichia coli, GI87082156, Length=87, Percent_Identity=41.3793103448276, Blast_Score=83, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017900
- InterPro:   IPR012206 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10698; Mature: 10567

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
5.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQNATVNVDIKLGVNKFHVDEGHPHIILAANPDINEFRKLMKACPAGLYKQDDAGNIHF
CCCCCEEEEEEEECCEEEEECCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCEEEE
DSAGCLECGTCRVLCGNTILKQWQYPAGTFGIEFRYG
CCCCCCCCCCEEEEECCHHHHHCCCCCCCEEEEEECC
>Mature Secondary Structure 
SQNATVNVDIKLGVNKFHVDEGHPHIILAANPDINEFRKLMKACPAGLYKQDDAGNIHF
CCCCEEEEEEEECCEEEEECCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCEEEE
DSAGCLECGTCRVLCGNTILKQWQYPAGTFGIEFRYG
CCCCCCCCCCEEEEECCHHHHHCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]