Click here to switch to the map view.

The map label for this gene is flgF [H]

Identifier: 218689030

GI number: 218689030

Start: 1219785

End: 1220540

Strand: Direct

Name: flgF [H]

Synonym: ECED1_1221

Alternate gene names: 218689030

Gene position: 1219785-1220540 (Clockwise)

Preceding gene: 218689029

Following gene: 218689031

Centisome position: 23.41

GC content: 58.99

Gene sequence:

>756_bases
ATGGATCACGCAATTTATACCGCGATGGGAGCAGCCAGCCAGACGCTGAATCAACAGGCGGTAACCGCCAATAATCTGGC
CAATGCCTCAACGCCCGGTTTTCGCGCGCAGTTAAACGCCTTGCGCGCAGTGCCGGTGGAAGGGCTTTCACTGCCCACGC
GCACGCTGGTAACGGCGTCAACACCGGGTGCAGACATGACGCCCGGCAAGATGGATTACACCTCGCGCCCGCTGGACGTT
GCGTTGCAGCAGGATGGTTGGCTGGCCGTGCAGACCGCTGACGGCAGTGAAGGGTATACGCGTAATGGCAGCATTCAGGT
TGATCCTACCGGGCAACTGACAATTCAGGGACATCCGGTGGTAGGCGAGGCGGGGCCAATTGCTGTGCCGGAAGGGGCGG
AAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTGAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTGGGGCGT
CTGAAGCTGGTGAAAGCCACGGGCAGCGAAGTCCAGCGCGGTGACGATGGCATTTTTCGTTTAAGCGCAGAAAGCCAGGC
TAGGCGTGGGCCGGTACTGCAGGCAGATCCAACCTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCG
TTGCGGCAATGAGCGACATGATTGCCAGCGCACGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATGATAAC
GCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAA

Upstream 100 bases:

>100_bases
GCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTA
ATCGCTGACGGGATAGCTCA

Downstream 100 bases:

>100_bases
TTGAAAGGATACATGACAAGTATAAGTTGCCCTATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATT
TTGCGAGTTCTTGTAGGCCG

Product: flagellar basal body rod protein FlgF

Products: NA

Alternate protein names: Putative proximal rod protein [H]

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MDHAIYTAMGAASQTLNQQAVTANNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVTASTPGADMTPGKMDYTSRPLDV
ALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQLTIQGHPVVGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVGR
LKLVKATGSEVQRGDDGIFRLSAESQARRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDDN
AGRANQLLSMS

Sequences:

>Translated_251_residues
MDHAIYTAMGAASQTLNQQAVTANNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVTASTPGADMTPGKMDYTSRPLDV
ALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQLTIQGHPVVGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVGR
LKLVKATGSEVQRGDDGIFRLSAESQARRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDDN
AGRANQLLSMS
>Mature_251_residues
MDHAIYTAMGAASQTLNQQAVTANNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVTASTPGADMTPGKMDYTSRPLDV
ALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQLTIQGHPVVGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVGR
LKLVKATGSEVQRGDDGIFRLSAESQARRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDDN
AGRANQLLSMS

Specific function: Unknown

COG id: COG4787

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family [H]

Homologues:

Organism=Escherichia coli, GI1787317, Length=251, Percent_Identity=98.406374501992, Blast_Score=496, Evalue=1e-142,
Organism=Escherichia coli, GI1787318, Length=250, Percent_Identity=32.4, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR020013
- InterPro:   IPR012836 [H]

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]

EC number: NA

Molecular weight: Translated: 25967; Mature: 25967

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS00588 FLAGELLA_BB_ROD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHAIYTAMGAASQTLNQQAVTANNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVTAS
CCCCEEEHHHHHHHHHCHHHEECCCCCCCCCCCHHHHHHHHEECCCCCCCCCCEEEEEEC
TPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQLTIQGHPV
CCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCEEEECCCCE
VGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVGRLKLVKATGSEVQRGDDGIFR
ECCCCCEECCCCCEEEEEECCEEEECCCCCCCCCCCCCCEEEEEEECCCHHHCCCCCEEE
LSAESQARRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDDN
EECCCHHHCCCEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
AGRANQLLSMS
CCCCCCEEECC
>Mature Secondary Structure
MDHAIYTAMGAASQTLNQQAVTANNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVTAS
CCCCEEEHHHHHHHHHCHHHEECCCCCCCCCCCHHHHHHHHEECCCCCCCCCCEEEEEEC
TPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQLTIQGHPV
CCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCEEEECCCCE
VGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVGRLKLVKATGSEVQRGDDGIFR
ECCCCCEECCCCCEEEEEECCEEEECCCCCCCCCCCCCCEEEEEEECCCHHHCCCCCEEE
LSAESQARRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDDN
EECCCHHHCCCEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
AGRANQLLSMS
CCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]