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The map label for this gene is ycbK

Identifier: 218688769

GI number: 218688769

Start: 987611

End: 988159

Strand: Direct

Name: ycbK

Synonym: ECED1_0956

Alternate gene names: 218688769

Gene position: 987611-988159 (Clockwise)

Preceding gene: 218688768

Following gene: 218688770

Centisome position: 18.96

GC content: 50.46

Gene sequence:

>549_bases
ATGGACAAATTCGACGCTAATCGCCGCAAACTGCTGGCGCTTGGTGGCGTTGCACTCGGTGCCGCCATCCTGCCGACCCC
GGCGTTTGCAACACTCTCTACCCCACGCCCGCGCATTTTGACACTCAATAATCTTCATACCGGAGAGTCAATCAAAGCGG
AGTTTTTCGATGGCAGAGGCTATATTCAGGAAGAATTGGCAAAACTTAACCATTTTTTCCGCGATTACCGCGCGAACAAA
ATAAAGTCCATCGACCCAGGATTATTCGACCAGTTGTATCGCCTGCAAGGGTTGTTAGGCACCCGCAAACCGGTGCAACT
CATTTCCGGTTATCGTTCCATTGATACCAACAATGAACTACGCGCCCGCAGCCGTGGAGTAGCGAAGAAAAGCTATCACA
CTAAAGGCCAAGCGATGGATTTCCACATTGAAGGTATCGCGTTAAGCAATATTCGCAAAGCCGCGTTATCTATGCGCGCA
GGTGGTGTAGGATATTACCCACGTAGTAACTTTGTGCATATTGATACCGGGCCAGCACGGCACTGGTAG

Upstream 100 bases:

>100_bases
GGTTGAGTCATCTTGACGTCTGCTTTACGGGCGGTTAAGGTGCCTCTTGTGCGCCAGAAGTGCATATAAACGATAACATT
GACCTGTAGACTTGATTATC

Downstream 100 bases:

>100_bases
TAATCGCTTAACGAAACAGGGGCAGTATGAACTATCGTATTATTCCGGTCACCGCATTCTCCCAGAACTGTTCATTGATC
TGGTGTGAACAAACCCGTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MDKFDANRRKLLALGGVALGAAILPTPAFATLSTPRPRILTLNNLHTGESIKAEFFDGRGYIQEELAKLNHFFRDYRANK
IKSIDPGLFDQLYRLQGLLGTRKPVQLISGYRSIDTNNELRARSRGVAKKSYHTKGQAMDFHIEGIALSNIRKAALSMRA
GGVGYYPRSNFVHIDTGPARHW

Sequences:

>Translated_182_residues
MDKFDANRRKLLALGGVALGAAILPTPAFATLSTPRPRILTLNNLHTGESIKAEFFDGRGYIQEELAKLNHFFRDYRANK
IKSIDPGLFDQLYRLQGLLGTRKPVQLISGYRSIDTNNELRARSRGVAKKSYHTKGQAMDFHIEGIALSNIRKAALSMRA
GGVGYYPRSNFVHIDTGPARHW
>Mature_182_residues
MDKFDANRRKLLALGGVALGAAILPTPAFATLSTPRPRILTLNNLHTGESIKAEFFDGRGYIQEELAKLNHFFRDYRANK
IKSIDPGLFDQLYRLQGLLGTRKPVQLISGYRSIDTNNELRARSRGVAKKSYHTKGQAMDFHIEGIALSNIRKAALSMRA
GGVGYYPRSNFVHIDTGPARHW

Specific function: Unknown

COG id: COG3108

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1666

Homologues:

Organism=Escherichia coli, GI1787157, Length=182, Percent_Identity=100, Blast_Score=373, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCBK_ECO57 (P0AB08)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   A90755
- RefSeq:   NP_286801.1
- RefSeq:   NP_309036.1
- ProteinModelPortal:   P0AB08
- SMR:   P0AB08
- EnsemblBacteria:   EBESCT00000023949
- EnsemblBacteria:   EBESCT00000060151
- GeneID:   917754
- GeneID:   958899
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z1273
- KEGG:   ecs:ECs1009
- GeneTree:   EBGT00050000011500
- HOGENOM:   HBG613277
- OMA:   VAKHSYH
- ProtClustDB:   CLSK879849
- BioCyc:   ECOL83334:ECS1009-MONOMER
- InterPro:   IPR010275
- InterPro:   IPR009045
- InterPro:   IPR006311
- Gene3D:   G3DSA:3.30.1380.10
- TIGRFAMs:   TIGR01409

Pfam domain/function: PF05951 Peptidase_M15_2; SSF55166 Hedgehog_sig_N

EC number: NA

Molecular weight: Translated: 20355; Mature: 20355

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: PS51318 TAT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKFDANRRKLLALGGVALGAAILPTPAFATLSTPRPRILTLNNLHTGESIKAEFFDGRG
CCCCCCCCCEEEEECCHHHHHHHCCCCCEEECCCCCCEEEEECCCCCCCCCEEEEECCCC
YIQEELAKLNHFFRDYRANKIKSIDPGLFDQLYRLQGLLGTRKPVQLISGYRSIDTNNEL
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCHHCCCCCCHH
RARSRGVAKKSYHTKGQAMDFHIEGIALSNIRKAALSMRAGGVGYYPRSNFVHIDTGPAR
HHHHCCCHHHHCCCCCCEEEEEECCEEHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCC
HW
CC
>Mature Secondary Structure
MDKFDANRRKLLALGGVALGAAILPTPAFATLSTPRPRILTLNNLHTGESIKAEFFDGRG
CCCCCCCCCEEEEECCHHHHHHHCCCCCEEECCCCCCEEEEECCCCCCCCCEEEEECCCC
YIQEELAKLNHFFRDYRANKIKSIDPGLFDQLYRLQGLLGTRKPVQLISGYRSIDTNNEL
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCHHCCCCCCHH
RARSRGVAKKSYHTKGQAMDFHIEGIALSNIRKAALSMRAGGVGYYPRSNFVHIDTGPAR
HHHHCCCHHHHCCCCCCEEEEEECCEEHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCC
HW
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796