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The map label for this gene is ybaO [H]

Identifier: 218688311

GI number: 218688311

Start: 488889

End: 489575

Strand: Direct

Name: ybaO [H]

Synonym: ECED1_0471

Alternate gene names: 218688311

Gene position: 488889-489575 (Clockwise)

Preceding gene: 218688310

Following gene: 218688312

Centisome position: 9.38

GC content: 48.76

Gene sequence:

>687_bases
TTGCCGAAATCAGGCTGTCTCTCACTATTTGACGCACTGGCTGGACTATCCACATCTACCTTATTCCCCCGAATAACGAG
ATCCCTTCCAGCACCGGGCAATTGCCCGGTTTTTTTTGCGTTGAATTTGTCATTTTGTGCCGTGGTGCTTAAACCGCACA
GAATAAATTGTCGCGATTTCACCTTTAAAATAGAATTAAAAGAGAAAAAAATTCTCTGTGGAAGGGCTATGTTAGATAAA
ATTGACCGTAAGCTGCTGGCCTTGCTACAGCAGGATTGCACCCTCTCTTTGCAGGCACTGGCTGAAGCCGTTAATCTGAC
AACCACCCCCTGCTGGAAGCGTCTGAAACGGCTGGAGGACGACGGTATTCTTATCGGCAAAGTCGCCCTGCTGGATCCGG
AAAAAATAGGCCTCGGCCTGACCGCCTTTGTGCTGATAAAAACGCAACATCACAGCAGCGAATGGTATTGCCGCTTTGTC
ACGGTGGTTACCGAAATGCCAGAAGTGCTGGGGTTCTGGCGCATGGCTGGTGAATACGATTATCTGATGCGCGTCCAGGT
TGCCGACATGAAACGCTACGACGAGTTTTATAAGCGTCTGGTAAACAGTGTACCGGGGCTGTCGGACGTCACTTCCAGCT
TCGCGATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAA

Upstream 100 bases:

>100_bases
ACGATCGCGAAATGTTAGGCAGCGTCGGTAGCGGATTTATTATGGGCAATGCGATGCCGCAACTGCGCGCGGAGCTCCCG
CATTTACCGGTGATTGGACA

Downstream 100 bases:

>100_bases
ATATCCAGAATCAAGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAAGCTGGTATTTCCGTCGGGAATGGCGTCGC
TATCTCGGGGCTGTCGCCTT

Product: putative DNA-binding transcriptional regulator (Lrp-like)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MPKSGCLSLFDALAGLSTSTLFPRITRSLPAPGNCPVFFALNLSFCAVVLKPHRINCRDFTFKIELKEKKILCGRAMLDK
IDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFV
TVVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYDEFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE

Sequences:

>Translated_228_residues
MPKSGCLSLFDALAGLSTSTLFPRITRSLPAPGNCPVFFALNLSFCAVVLKPHRINCRDFTFKIELKEKKILCGRAMLDK
IDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFV
TVVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYDEFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE
>Mature_227_residues
PKSGCLSLFDALAGLSTSTLFPRITRSLPAPGNCPVFFALNLSFCAVVLKPHRINCRDFTFKIELKEKKILCGRAMLDKI
DRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVT
VVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYDEFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=152, Percent_Identity=100, Blast_Score=315, Evalue=2e-87,
Organism=Escherichia coli, GI1787116, Length=151, Percent_Identity=33.112582781457, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 25792; Mature: 25660

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKSGCLSLFDALAGLSTSTLFPRITRSLPAPGNCPVFFALNLSFCAVVLKPHRINCRDF
CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEECHHHHEEEECCCCCCCEEE
TFKIELKEKKILCGRAMLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLED
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCC
DGILIGKVALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGEYD
CCEEEEEEEEECHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
YLMRVQVADMKRYDEFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE
CEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PKSGCLSLFDALAGLSTSTLFPRITRSLPAPGNCPVFFALNLSFCAVVLKPHRINCRDF
CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEECHHHHEEEECCCCCCCEEE
TFKIELKEKKILCGRAMLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLED
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCC
DGILIGKVALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGEYD
CCEEEEEEEEECHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
YLMRVQVADMKRYDEFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE
CEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]