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The map label for this gene is ybaV [H]

Identifier: 218688306

GI number: 218688306

Start: 484659

End: 485030

Strand: Direct

Name: ybaV [H]

Synonym: ECED1_0466

Alternate gene names: 218688306

Gene position: 484659-485030 (Clockwise)

Preceding gene: 218688305

Following gene: 218688307

Centisome position: 9.3

GC content: 54.03

Gene sequence:

>372_bases
ATGAAACACGGAATTAAAGCACTGCTCATTACCCTGTCCCTGGCCTGTGCCGGAATGTCTCATAGTGCTCTGGCGGCAGC
TCCTGCGGCAAAACCGACAACGGTAGAAACCAAAGCGGAAGCTCCTGCAGCACAAAGTAAAGCAGCAGTTCCGGCGAAAG
CCAGTGACGAAGAAGGCACCCGGGTCAGCATTAATAATGCCAGCGCGGAAGAGTTAGCCCGCGCGATGAATGGCGTTGGC
CTGAAGAAAGCGCAGGCGATTGTCAGTTATCGCGAAGAGTACGGTCCGTTTAAAACGGTGGAGGATCTAAAGCAGGTGCC
GGGGATGGGCAATTCGCTGGTGGAACGTAATCTGGCGGTATTAACCCTGTAA

Upstream 100 bases:

>100_bases
TCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTA
ACAAACAAGGAGAAAACAGT

Downstream 100 bases:

>100_bases
TTAATTTGCATAGTGGCAATTTTTTGCCAGACTGAAGAGGTCATACCAGTTATGACCTCTGTACTTATAACAGTTCTTAT
AACAACAACGTAAGGTTATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MKHGIKALLITLSLACAGMSHSALAAAPAAKPTTVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVG
LKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL

Sequences:

>Translated_123_residues
MKHGIKALLITLSLACAGMSHSALAAAPAAKPTTVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVG
LKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL
>Mature_123_residues
MKHGIKALLITLSLACAGMSHSALAAAPAAKPTTVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVG
LKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains [H]

Homologues:

Organism=Escherichia coli, GI1786646, Length=123, Percent_Identity=97.5609756097561, Blast_Score=239, Evalue=5e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004509
- InterPro:   IPR003583 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12716; Mature: 12716

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHGIKALLITLSLACAGMSHSALAAAPAAKPTTVETKAEAPAAQSKAAVPAKASDEEGT
CCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV
EEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHCCEEE
LTL
EEC
>Mature Secondary Structure
MKHGIKALLITLSLACAGMSHSALAAAPAAKPTTVETKAEAPAAQSKAAVPAKASDEEGT
CCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV
EEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHCCEEE
LTL
EEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]