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The map label for this gene is ybfL [H]

Identifier: 218688111

GI number: 218688111

Start: 271746

End: 272147

Strand: Direct

Name: ybfL [H]

Synonym: ECED1_0250

Alternate gene names: 218688111

Gene position: 271746-272147 (Clockwise)

Preceding gene: 218688110

Following gene: 218688112

Centisome position: 5.22

GC content: 40.8

Gene sequence:

>402_bases
ATGCGTGACTGCCATTCCTCAGATGATAAAGATGTCATGGCAATTGATGGAAAAACGCTTCGGCACTCTTATGACAAGAG
TCGCCGCAAGGGAGCGATTTATGTCATTAAAATCCGTCTTCATATTATTTGCGATGTCCCTGATGAACTTATTGATTTCA
CGTTTGAATGGAAAGAGCTGAAGAAATTATGCATGGCAGTCTCCTTTCGTTCAATAATAACAGAACAAAAGAAAGAGCCA
GAAATGACGGACAGATATTATAGCATTTCTGCTGATTTAACCGCAGAGAAGTTCGCCACAGCGAACCGAAATCACTGGTA
CGTGGAGAATAAGCTGCACTGGCATCTGGACGTGGTAATGAATAAAGACGACTTCAAAATAATAAGAGGAAATGCAGCAT
AA

Upstream 100 bases:

>100_bases
ATATGGTGATTTTGAAAATGGTATTCCTGTTCACGATATCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTC
ATGAGTGCTTTATTAACTGG

Downstream 100 bases:

>100_bases
TTATTTTCAGGGATACGGAAGATCGCTATTAATATTTTAACGAAAGATAAGATACTCAAGGCAGGGGCAAGATGTAAGAT
GTGAAAAGCAGCTGCGGACA

Product: putative transposase

Products: NA

Alternate protein names: H repeat-associated protein in rhsC-phrB intergenic region; ORF-H2 [H]

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MRDCHSSDDKDVMAIDGKTLRHSYDKSRRKGAIYVIKIRLHIICDVPDELIDFTFEWKELKKLCMAVSFRSIITEQKKEP
EMTDRYYSISADLTAEKFATANRNHWYVENKLHWHLDVVMNKDDFKIIRGNAA

Sequences:

>Translated_133_residues
MRDCHSSDDKDVMAIDGKTLRHSYDKSRRKGAIYVIKIRLHIICDVPDELIDFTFEWKELKKLCMAVSFRSIITEQKKEP
EMTDRYYSISADLTAEKFATANRNHWYVENKLHWHLDVVMNKDDFKIIRGNAA
>Mature_133_residues
MRDCHSSDDKDVMAIDGKTLRHSYDKSRRKGAIYVIKIRLHIICDVPDELIDFTFEWKELKKLCMAVSFRSIITEQKKEP
EMTDRYYSISADLTAEKFATANRNHWYVENKLHWHLDVVMNKDDFKIIRGNAA

Specific function: Unknown

COG id: COG5433

COG function: function code L; Transposase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

Organism=Escherichia coli, GI1789896, Length=97, Percent_Identity=85.5670103092783, Blast_Score=173, Evalue=3e-45,
Organism=Escherichia coli, GI1787733, Length=97, Percent_Identity=84.5360824742268, Blast_Score=169, Evalue=6e-44,
Organism=Escherichia coli, GI1786924, Length=36, Percent_Identity=83.3333333333333, Blast_Score=61, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002559 [H]

Pfam domain/function: PF01609 Transposase_11 [H]

EC number: NA

Molecular weight: Translated: 15725; Mature: 15725

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDCHSSDDKDVMAIDGKTLRHSYDKSRRKGAIYVIKIRLHIICDVPDELIDFTFEWKEL
CCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCEEEEEEEEEEEECCCHHHHCCEECHHHH
KKLCMAVSFRSIITEQKKEPEMTDRYYSISADLTAEKFATANRNHWYVENKLHWHLDVVM
HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHCCCCCEEEEECEEEEEEEEEE
NKDDFKIIRGNAA
CCCCEEEEECCCC
>Mature Secondary Structure
MRDCHSSDDKDVMAIDGKTLRHSYDKSRRKGAIYVIKIRLHIICDVPDELIDFTFEWKEL
CCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCEEEEEEEEEEEECCCHHHHCCEECHHHH
KKLCMAVSFRSIITEQKKEPEMTDRYYSISADLTAEKFATANRNHWYVENKLHWHLDVVM
HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHCCCCCEEEEECEEEEEEEEEE
NKDDFKIIRGNAA
CCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8387990; 8905232; 9278503 [H]