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The map label for this gene is ybfD [C]

Identifier: 218688110

GI number: 218688110

Start: 271467

End: 271646

Strand: Direct

Name: ybfD [C]

Synonym: ECED1_0249

Alternate gene names: 218688110

Gene position: 271467-271646 (Clockwise)

Preceding gene: 218688109

Following gene: 218688111

Centisome position: 5.21

GC content: 36.67

Gene sequence:

>180_bases
ATGGATCTTAAAAAATTGATGGAACATATTTCTATTATCCCTGATTCCAGGCAAGCCTGGAAAGTGGAACATAAATTGCC
AGATATTCTATCTGTTAACTATTTGCGCCGTTATTTTTGGTGCATAAGGCTGGGAAGATATAGAGGATTTGGGGAAACAC
ATCCCTATTTTTTGAAGTGA

Upstream 100 bases:

>100_bases
GCATTTTATGTTCAATAATTGAGGTGTTCCTTATTACCTAAAGCTGTTTTTCATTGCTTATGCATGATCAAATACTCATT
GCATAATTAAGGGGGGCAAA

Downstream 100 bases:

>100_bases
TATGGTGATTTTGAAAATGGTATTCCTGTTCACGATATCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCA
TGAGTGCTTTATTAACTGGA

Product: putative H-repeat associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 59; Mature: 59

Protein sequence:

>59_residues
MDLKKLMEHISIIPDSRQAWKVEHKLPDILSVNYLRRYFWCIRLGRYRGFGETHPYFLK

Sequences:

>Translated_59_residues
MDLKKLMEHISIIPDSRQAWKVEHKLPDILSVNYLRRYFWCIRLGRYRGFGETHPYFLK
>Mature_59_residues
MDLKKLMEHISIIPDSRQAWKVEHKLPDILSVNYLRRYFWCIRLGRYRGFGETHPYFLK

Specific function: Unknown

COG id: COG5433

COG function: function code L; Transposase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786924, Length=59, Percent_Identity=61.0169491525424, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1787733, Length=59, Percent_Identity=57.6271186440678, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1789896, Length=59, Percent_Identity=57.6271186440678, Blast_Score=62, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7267; Mature: 7267

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLKKLMEHISIIPDSRQAWKVEHKLPDILSVNYLRRYFWCIRLGRYRGFGETHPYFLK
CCHHHHHHHHHCCCCCCHHEEHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MDLKKLMEHISIIPDSRQAWKVEHKLPDILSVNYLRRYFWCIRLGRYRGFGETHPYFLK
CCHHHHHHHHHCCCCCCHHEEHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA