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The map label for this gene is ycbS [H]

Identifier: 218550691

GI number: 218550691

Start: 3465015

End: 3467606

Strand: Reverse

Name: ycbS [H]

Synonym: EFER_3402

Alternate gene names: 218550691

Gene position: 3467606-3465015 (Counterclockwise)

Preceding gene: 218550692

Following gene: 218550690

Centisome position: 75.57

GC content: 41.44

Gene sequence:

>2592_bases
ATGAACCTAAAGCTCAGAAAACTCGAACACGGGATGGCAAGGCACAAGCAGATGAGGCGGTGTATGCTGCTTCTACTGAC
ACTTTTGCCTACGTGTTCAGTGGCGGGTATGCGCTTTAACCCTGCATTCCTGTCGGGTGATACCGAAGCTGTTGCTGATT
TATCTCGTTTTGAGAAAGGGATGACATATCTGCCTGGTAGCTATGAGGTTGAAATATGGGTCAATGATTCGCCTTTGACA
TCACGTAAGGTGACTTTCAACGCTGATGAGCAGAATCAGTTGATCCCCTGTTTTTCGCTCGATGAGTTAGTTACTTTAGG
AATTAACAAAAGTGCATTGCCGGAGCAGGCGCAAGCAGAGGGGAATAATTGTCTCGATTTACGTATATGGTTTGCAGAAG
TTCAATATACTCCTGAACTGGATGCGCAACGACTCAAACTGACCTTTCCGCAGGCAATATTAAAGCATGAAGCACGTGGT
TATATTCCGCCTGAGGAATGGGATAATGGTATCCCGGCCATTCTTATTAATTATGATTTTTCTGGCAACAGTGATCGTGG
AGACTATGCGTCTGATAGTTATTATTTAAATCTCCGTTCAGGTTTAAATTTAGGGGCGTGGCGTTTTCGTGATTATTCTA
CATGGAGTCGTTCAGGTAATTCACCGGGTAAAATTGCACATGTGAGTAGTACGTTACAACGAGTAATTATTCCTTTTAAA
AGTGAATTAACACTAGGTGATACCTGGTCTTCATCGGATGTTTTCGACAGCGTGAGTATTCGTGGTGCTAAACTTGAATC
CGATGAAAACATGCTACCCGATAGCCAAAGTGGTTTTGCCCCCACTGTGCGCGGTATTGCTAAAAGTAATGCTCAGGTAA
CGATTAAACAAAATGGCTATGTTATTTATCAGACATATACTCCTCCCGGACCTTTTGAAATCAATGATCTGAACCCTACG
TCTTCCGCTGGGGATTTGGAAGTTACGATCAAAGAGTCTGATAATTCCGAAACTATCTATACCATTCCTTACGCCGCTGT
TCCCATTCTTCAACGAGAAGGGCATATTAAATATTCGGCAACGGTCGGTAAATATCGTAGCAATAGCTATAATCAAAACA
GTCCGAATGTCTTTCAAGGAGATTTGATTTGGGGGTTACCCTGGGATATTACCGCCTACGGAGGGATGCAATACTCAAAT
AATTATCGGGCAATTGCACTCGGTCTTGGATTCAACTTTGGTATGTTTGGTGCGACGTCATTTGATTTGACGCAAGCCAA
TAGCACCCTTACTGATGGCAGTAAACATCAAGGGCAATCGTACCGTTTTCTATACTCAAAATCGTTAGTACAAACAGGTA
CGGCGTTTCAGATTATTGGTTATCGCTATTCGACGGAGGGATTTTATTCGTTGAGTGATACCACATACAAAAAAATGTCG
GGTACGGTTATCGATCCAGATACCCTTAATGAAAAAGACTATGTTTATAACTGGAATGATTTTTATAATTTACGTTATAA
CAAAAGAGGAAAGTTTCAGGCAAATATATCGCAACCATTGGGCGAATATGGCTCTATGTATTTGGCGGCAAGTCAACAAA
CTTACTGGAATACGAATAATAAAGATACCTTGTATCAGGTTGGCTATAATACGAGCGTACATGGGATTTATTTAAATATT
GCTTATAATTATAGCAAGTCACCAGGTTCAGATGCGGACAGAATCTTATCCGTAAATGTCTCATTGCCGATCAGTAATTG
GTTATCACCAGCAGTCGATGGGCGTACTGTGACAAATTCTATGACAGCGACTTATGGTTACAATCAGGATAATAGCGGTC
ATGTAAATCAGTATGTCGGAGTATCTGGATCGCTGCTGGAACAACATAATCTCAACTATAATGTTCAACAAAATTTTGCC
AACCAGAATAATGGCGAAAATGGCTCGGTAGGTTTAAATTACCGTGGTACATATGGTTCACTAAATTCTGGATACAGCTA
CGATAATAATCGTAACCAGCAATTTAACTATGGTTTAAGTGGTGCCATGGTTATTCACGAAAATGGTTTCACGCTAAGTC
AGCCGTTAGGTGAAACAAATATACTGATAAAAGCGCCAGGGGCAAATAATGTTAATGTGGAACGCGGAACAGGGGTTAAA
ACAGACTGGCGTGGCTATGCTGTCGTACCTTATGCCACGGAATATCGGCGTAATAATATCTCTTTAGACCCTATGTCTAT
GAGTATGCATACAGAATTAGATGCTACTACTATGGAAGTGATACCTAGCAAAGGTGCTTTAGTTCGTGCTGAGTTTAATG
CACATGTTGGTATTCGTGGTTTATTTAATATTCGCTATCGTAGTAAATCAGTTCCATTTGGTGCGACGGCCAGTGTATCC
ACTGAGGGGACAACTCAGATTACAGGAATAGTGGGTGACAGTGGGCAGGTATATCTCTCCGGTTTGCCTTTACAAGGCAT
AATAAATATACAGTGGGGAGAAAATTCTTATCAGCAATGTCGGGCAAGCTATCAATTACCAGAAAGCGAGCTAGCTAATG
CTATTAGCTATGCAGACCTGGAGTGCCGCTAA

Upstream 100 bases:

>100_bases
TATCAAACAATTAATGATTACGGTGCTACGACGGCCAGGCAAAAGGGAACGATGCAATAAACCTGGAAGATAAAACATTA
AAGTAACTCAGGTCAGGGAT

Downstream 100 bases:

>100_bases
TGAATATATTACAGAAATTTATTCTATTAATTTTTACATCATTGTCCATGATGGTGATTTCATGTGATGCACTGGCTAAC
GATACCGTAGTAGTTACATT

Product: outer membrane export usher protein aufC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 863; Mature: 863

Protein sequence:

>863_residues
MNLKLRKLEHGMARHKQMRRCMLLLLTLLPTCSVAGMRFNPAFLSGDTEAVADLSRFEKGMTYLPGSYEVEIWVNDSPLT
SRKVTFNADEQNQLIPCFSLDELVTLGINKSALPEQAQAEGNNCLDLRIWFAEVQYTPELDAQRLKLTFPQAILKHEARG
YIPPEEWDNGIPAILINYDFSGNSDRGDYASDSYYLNLRSGLNLGAWRFRDYSTWSRSGNSPGKIAHVSSTLQRVIIPFK
SELTLGDTWSSSDVFDSVSIRGAKLESDENMLPDSQSGFAPTVRGIAKSNAQVTIKQNGYVIYQTYTPPGPFEINDLNPT
SSAGDLEVTIKESDNSETIYTIPYAAVPILQREGHIKYSATVGKYRSNSYNQNSPNVFQGDLIWGLPWDITAYGGMQYSN
NYRAIALGLGFNFGMFGATSFDLTQANSTLTDGSKHQGQSYRFLYSKSLVQTGTAFQIIGYRYSTEGFYSLSDTTYKKMS
GTVIDPDTLNEKDYVYNWNDFYNLRYNKRGKFQANISQPLGEYGSMYLAASQQTYWNTNNKDTLYQVGYNTSVHGIYLNI
AYNYSKSPGSDADRILSVNVSLPISNWLSPAVDGRTVTNSMTATYGYNQDNSGHVNQYVGVSGSLLEQHNLNYNVQQNFA
NQNNGENGSVGLNYRGTYGSLNSGYSYDNNRNQQFNYGLSGAMVIHENGFTLSQPLGETNILIKAPGANNVNVERGTGVK
TDWRGYAVVPYATEYRRNNISLDPMSMSMHTELDATTMEVIPSKGALVRAEFNAHVGIRGLFNIRYRSKSVPFGATASVS
TEGTTQITGIVGDSGQVYLSGLPLQGIINIQWGENSYQQCRASYQLPESELANAISYADLECR

Sequences:

>Translated_863_residues
MNLKLRKLEHGMARHKQMRRCMLLLLTLLPTCSVAGMRFNPAFLSGDTEAVADLSRFEKGMTYLPGSYEVEIWVNDSPLT
SRKVTFNADEQNQLIPCFSLDELVTLGINKSALPEQAQAEGNNCLDLRIWFAEVQYTPELDAQRLKLTFPQAILKHEARG
YIPPEEWDNGIPAILINYDFSGNSDRGDYASDSYYLNLRSGLNLGAWRFRDYSTWSRSGNSPGKIAHVSSTLQRVIIPFK
SELTLGDTWSSSDVFDSVSIRGAKLESDENMLPDSQSGFAPTVRGIAKSNAQVTIKQNGYVIYQTYTPPGPFEINDLNPT
SSAGDLEVTIKESDNSETIYTIPYAAVPILQREGHIKYSATVGKYRSNSYNQNSPNVFQGDLIWGLPWDITAYGGMQYSN
NYRAIALGLGFNFGMFGATSFDLTQANSTLTDGSKHQGQSYRFLYSKSLVQTGTAFQIIGYRYSTEGFYSLSDTTYKKMS
GTVIDPDTLNEKDYVYNWNDFYNLRYNKRGKFQANISQPLGEYGSMYLAASQQTYWNTNNKDTLYQVGYNTSVHGIYLNI
AYNYSKSPGSDADRILSVNVSLPISNWLSPAVDGRTVTNSMTATYGYNQDNSGHVNQYVGVSGSLLEQHNLNYNVQQNFA
NQNNGENGSVGLNYRGTYGSLNSGYSYDNNRNQQFNYGLSGAMVIHENGFTLSQPLGETNILIKAPGANNVNVERGTGVK
TDWRGYAVVPYATEYRRNNISLDPMSMSMHTELDATTMEVIPSKGALVRAEFNAHVGIRGLFNIRYRSKSVPFGATASVS
TEGTTQITGIVGDSGQVYLSGLPLQGIINIQWGENSYQQCRASYQLPESELANAISYADLECR
>Mature_863_residues
MNLKLRKLEHGMARHKQMRRCMLLLLTLLPTCSVAGMRFNPAFLSGDTEAVADLSRFEKGMTYLPGSYEVEIWVNDSPLT
SRKVTFNADEQNQLIPCFSLDELVTLGINKSALPEQAQAEGNNCLDLRIWFAEVQYTPELDAQRLKLTFPQAILKHEARG
YIPPEEWDNGIPAILINYDFSGNSDRGDYASDSYYLNLRSGLNLGAWRFRDYSTWSRSGNSPGKIAHVSSTLQRVIIPFK
SELTLGDTWSSSDVFDSVSIRGAKLESDENMLPDSQSGFAPTVRGIAKSNAQVTIKQNGYVIYQTYTPPGPFEINDLNPT
SSAGDLEVTIKESDNSETIYTIPYAAVPILQREGHIKYSATVGKYRSNSYNQNSPNVFQGDLIWGLPWDITAYGGMQYSN
NYRAIALGLGFNFGMFGATSFDLTQANSTLTDGSKHQGQSYRFLYSKSLVQTGTAFQIIGYRYSTEGFYSLSDTTYKKMS
GTVIDPDTLNEKDYVYNWNDFYNLRYNKRGKFQANISQPLGEYGSMYLAASQQTYWNTNNKDTLYQVGYNTSVHGIYLNI
AYNYSKSPGSDADRILSVNVSLPISNWLSPAVDGRTVTNSMTATYGYNQDNSGHVNQYVGVSGSLLEQHNLNYNVQQNFA
NQNNGENGSVGLNYRGTYGSLNSGYSYDNNRNQQFNYGLSGAMVIHENGFTLSQPLGETNILIKAPGANNVNVERGTGVK
TDWRGYAVVPYATEYRRNNISLDPMSMSMHTELDATTMEVIPSKGALVRAEFNAHVGIRGLFNIRYRSKSVPFGATASVS
TEGTTQITGIVGDSGQVYLSGLPLQGIINIQWGENSYQQCRASYQLPESELANAISYADLECR

Specific function: Could be involved in the export and assembly of the putative ycbQ fimbrial subunit across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1787172, Length=833, Percent_Identity=49.4597839135654, Blast_Score=795, Evalue=0.0,
Organism=Escherichia coli, GI1790772, Length=887, Percent_Identity=45.4340473506201, Blast_Score=784, Evalue=0.0,
Organism=Escherichia coli, GI1786744, Length=848, Percent_Identity=45.872641509434, Blast_Score=746, Evalue=0.0,
Organism=Escherichia coli, GI1789533, Length=859, Percent_Identity=37.1362048894063, Blast_Score=537, Evalue=1e-153,
Organism=Escherichia coli, GI1786332, Length=889, Percent_Identity=31.2710911136108, Blast_Score=380, Evalue=1e-106,
Organism=Escherichia coli, GI1788427, Length=802, Percent_Identity=29.6758104738155, Blast_Score=325, Evalue=1e-89,
Organism=Escherichia coli, GI87081778, Length=861, Percent_Identity=26.7131242740999, Blast_Score=251, Evalue=2e-67,
Organism=Escherichia coli, GI1789610, Length=809, Percent_Identity=23.9802224969098, Blast_Score=133, Evalue=6e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 95951; Mature: 95951

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKLRKLEHGMARHKQMRRCMLLLLTLLPTCSVAGMRFNPAFLSGDTEAVADLSRFEKG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCEEECCCHHHHHHHHHHHCC
MTYLPGSYEVEIWVNDSPLTSRKVTFNADEQNQLIPCFSLDELVTLGINKSALPEQAQAE
CEECCCCEEEEEEECCCCCCCEEEEECCCCCCCEECEECCCHHEEECCCCCCCCCHHHHC
GNNCLDLRIWFAEVQYTPELDAQRLKLTFPQAILKHEARGYIPPEEWDNGIPAILINYDF
CCCEEEEEEEEEEEEECCCCCCCEEEEECHHHHHHHHCCCCCCHHHHCCCCCEEEEEEEC
SGNSDRGDYASDSYYLNLRSGLNLGAWRFRDYSTWSRSGNSPGKIAHVSSTLQRVIIPFK
CCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCHHHCCCCCCCEEEHHHHHHHHHEECCC
SELTLGDTWSSSDVFDSVSIRGAKLESDENMLPDSQSGFAPTVRGIAKSNAQVTIKQNGY
CCEEECCCCCCCCCCCCEEEECEEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCE
VIYQTYTPPGPFEINDLNPTSSAGDLEVTIKESDNSETIYTIPYAAVPILQREGHIKYSA
EEEEECCCCCCEEECCCCCCCCCCEEEEEEEECCCCCEEEECCHHEEEEEECCCCEEEEE
TVGKYRSNSYNQNSPNVFQGDLIWGLPWDITAYGGMQYSNNYRAIALGLGFNFGMFGATS
EECCCCCCCCCCCCCCEEECCEEECCCCCEEEECCEEECCCEEEEEEEECCCCCCCCCCE
FDLTQANSTLTDGSKHQGQSYRFLYSKSLVQTGTAFQIIGYRYSTEGFYSLSDTTYKKMS
EEEECCCCCCCCCCCCCCCCEEEEEEHHHHCCCCEEEEEEEEECCCCEEEECCCCHHHCC
GTVIDPDTLNEKDYVYNWNDFYNLRYNKRGKFQANISQPLGEYGSMYLAASQQTYWNTNN
CCEECCCCCCCCCEEEECCCEEEEEECCCCCEEECCHHHHHHHCCEEEEECCCEEECCCC
KDTLYQVGYNTSVHGIYLNIAYNYSKSPGSDADRILSVNVSLPISNWLSPAVDGRTVTNS
CCEEEEECCCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEECCHHHCCCCCCCCEEEECC
MTATYGYNQDNSGHVNQYVGVSGSLLEQHNLNYNVQQNFANQNNGENGSVGLNYRGTYGS
EEEEECCCCCCCCCCEEEECCCCCHHHHCCCCEEEHHCCCCCCCCCCCEEEEEECCCCCC
LNSGYSYDNNRNQQFNYGLSGAMVIHENGFTLSQPLGETNILIKAPGANNVNVERGTGVK
CCCCCCCCCCCCCEEECCCCEEEEEEECCCEECCCCCCCEEEEECCCCCCCEEECCCCCC
TDWRGYAVVPYATEYRRNNISLDPMSMSMHTELDATTMEVIPSKGALVRAEFNAHVGIRG
CCCCCEEEEECHHHHCCCCCEECCCEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEE
LFNIRYRSKSVPFGATASVSTEGTTQITGIVGDSGQVYLSGLPLQGIINIQWGENSYQQC
EEEEEEECCCCCCCCEEECCCCCCEEEEEEECCCCCEEEECCCCCEEEEEEECCCHHHHH
RASYQLPESELANAISYADLECR
HHHCCCCHHHHHHHHCCCCEECC
>Mature Secondary Structure
MNLKLRKLEHGMARHKQMRRCMLLLLTLLPTCSVAGMRFNPAFLSGDTEAVADLSRFEKG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCEEECCCHHHHHHHHHHHCC
MTYLPGSYEVEIWVNDSPLTSRKVTFNADEQNQLIPCFSLDELVTLGINKSALPEQAQAE
CEECCCCEEEEEEECCCCCCCEEEEECCCCCCCEECEECCCHHEEECCCCCCCCCHHHHC
GNNCLDLRIWFAEVQYTPELDAQRLKLTFPQAILKHEARGYIPPEEWDNGIPAILINYDF
CCCEEEEEEEEEEEEECCCCCCCEEEEECHHHHHHHHCCCCCCHHHHCCCCCEEEEEEEC
SGNSDRGDYASDSYYLNLRSGLNLGAWRFRDYSTWSRSGNSPGKIAHVSSTLQRVIIPFK
CCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCHHHCCCCCCCEEEHHHHHHHHHEECCC
SELTLGDTWSSSDVFDSVSIRGAKLESDENMLPDSQSGFAPTVRGIAKSNAQVTIKQNGY
CCEEECCCCCCCCCCCCEEEECEEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCE
VIYQTYTPPGPFEINDLNPTSSAGDLEVTIKESDNSETIYTIPYAAVPILQREGHIKYSA
EEEEECCCCCCEEECCCCCCCCCCEEEEEEEECCCCCEEEECCHHEEEEEECCCCEEEEE
TVGKYRSNSYNQNSPNVFQGDLIWGLPWDITAYGGMQYSNNYRAIALGLGFNFGMFGATS
EECCCCCCCCCCCCCCEEECCEEECCCCCEEEECCEEECCCEEEEEEEECCCCCCCCCCE
FDLTQANSTLTDGSKHQGQSYRFLYSKSLVQTGTAFQIIGYRYSTEGFYSLSDTTYKKMS
EEEECCCCCCCCCCCCCCCCEEEEEEHHHHCCCCEEEEEEEEECCCCEEEECCCCHHHCC
GTVIDPDTLNEKDYVYNWNDFYNLRYNKRGKFQANISQPLGEYGSMYLAASQQTYWNTNN
CCEECCCCCCCCCEEEECCCEEEEEECCCCCEEECCHHHHHHHCCEEEEECCCEEECCCC
KDTLYQVGYNTSVHGIYLNIAYNYSKSPGSDADRILSVNVSLPISNWLSPAVDGRTVTNS
CCEEEEECCCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEECCHHHCCCCCCCCEEEECC
MTATYGYNQDNSGHVNQYVGVSGSLLEQHNLNYNVQQNFANQNNGENGSVGLNYRGTYGS
EEEEECCCCCCCCCCEEEECCCCCHHHHCCCCEEEHHCCCCCCCCCCCEEEEEECCCCCC
LNSGYSYDNNRNQQFNYGLSGAMVIHENGFTLSQPLGETNILIKAPGANNVNVERGTGVK
CCCCCCCCCCCCCEEECCCCEEEEEEECCCEECCCCCCCEEEEECCCCCCCEEECCCCCC
TDWRGYAVVPYATEYRRNNISLDPMSMSMHTELDATTMEVIPSKGALVRAEFNAHVGIRG
CCCCCEEEEECHHHHCCCCCEECCCEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEE
LFNIRYRSKSVPFGATASVSTEGTTQITGIVGDSGQVYLSGLPLQGIINIQWGENSYQQC
EEEEEEECCCCCCCCEEECCCCCCEEEEEEECCCCCEEEECCCCCEEEEEEECCCHHHHH
RASYQLPESELANAISYADLECR
HHHCCCCHHHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]