Click here to switch to the map view.

The map label for this gene is yhfX [H]

Identifier: 218550637

GI number: 218550637

Start: 3404277

End: 3405440

Strand: Reverse

Name: yhfX [H]

Synonym: EFER_3347

Alternate gene names: 218550637

Gene position: 3405440-3404277 (Counterclockwise)

Preceding gene: 218550638

Following gene: 218550636

Centisome position: 74.21

GC content: 54.3

Gene sequence:

>1164_bases
ATGTTTGTAGAAGCATTGAAACGCCAGAACCCGGCACTGATTTCCGCCGCACTCAGTTTGTGGCAACAGGGCAAGATCGC
CCCGGACAGTTGGGTAATCGACGTCGATCAGGTACTGGAAAACGGTAAGCGGCTGATTGAGACGGCAGGGCTTTACGGTA
TTGAACTGTATCTGATGACCAAACAGTTCGGTCGTAATCCGTGGCTGGCAGAAAAACTGCTGGCGCTGGGCTACAGCGGC
ATTGTGGCGGTGGATTACAAAGAGGCACGAATCATGCGCCGCACAGGTTTACCGGTGGCGCATCAGGGGCATCTGGTACA
AATCCCTTGTCATCAGGTTGCTGACGCCGTTGAACAGGGCACCGACGTCATCACCGTGTTTACACTCGACAAAGCGCGGG
AAGTTTCTGCGGCAGCGGTGACGGCCGGGCGGGTCCAGCCTGTGCTGCTCAAAGTTTATAGCGACGATGATTTTCTTTAT
CCGGGGCAGGAGAGCGGTTTTGCACAGCATTCGCTGCATGAGGTGGTTGCTGAAATCCAGAAACTACCGGGGTTACATTT
AGCCGGATTAACCCATTTCCCTTGCCTGCTATGGGATGAGGCTGCCGGGAAAGTTTTGCCAACACCGAACCTCCAGACGC
TGGTCAATGCTCGTAACCAACTTCTGAAGTCTGGAGTTGTACTTGAGCAATTAAACGCGCCTTCAGCGACCAGCTGCACT
TCGCTGCCATTACTGGCGGAATACGGTGTGACTCATGCCGAACCCGGCCATGCACTGACGGGGACGATTCCGGCAAACCA
GCAGGGCGACCAACCCGAACGTATCGCCATGCTTTGGCTGAGCGAAATTTCCCATCACTTCCGTGGCGACAGCTACTGCT
ACGGCGGCGGTTATTACCGTCGTGGTCACGCGCAACATGCGCTGGTGTTTACGCCAGAAAATCAAAAGATTACTGAAACC
AATATCAAAACTGTGGATGACAGCAGTATCGACTACACCCTGCCGCTGGCAGGCGAGTATCCGGTGAGCAGTGCAGTGGT
GCTCTGTTTTCGCACGCAGATTTTTGTCACTCGTAGCGATGTGGTGCTGGTGTCCGGTATTCACCGTGGCGAACCGGAAA
TCGTTGGTCGTTATGACAGTCTTGGAAGCTCTCTGGAGGCGTAA

Upstream 100 bases:

>100_bases
CTAACGAAGAGGTCTGAATCTCCCGGCAAATCCACGTCGCGTATCTTAAATATTCAAAAAAATGAATATTTAATTCAAGG
AACAGAAACGAGGCAACAAG

Downstream 100 bases:

>100_bases
TGGCGCGATTTGTGGTGTTAGTGATTGATAGCTTTGGCGTAGGGGCAATGAAAGATGTCACGTTGGTGCGTCCGCAGGAT
GCCGGGGCGAATACCTGTGG

Product: amino acid racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MFVEALKRQNPALISAALSLWQQGKIAPDSWVIDVDQVLENGKRLIETAGLYGIELYLMTKQFGRNPWLAEKLLALGYSG
IVAVDYKEARIMRRTGLPVAHQGHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVTAGRVQPVLLKVYSDDDFLY
PGQESGFAQHSLHEVVAEIQKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLQTLVNARNQLLKSGVVLEQLNAPSATSCT
SLPLLAEYGVTHAEPGHALTGTIPANQQGDQPERIAMLWLSEISHHFRGDSYCYGGGYYRRGHAQHALVFTPENQKITET
NIKTVDDSSIDYTLPLAGEYPVSSAVVLCFRTQIFVTRSDVVLVSGIHRGEPEIVGRYDSLGSSLEA

Sequences:

>Translated_387_residues
MFVEALKRQNPALISAALSLWQQGKIAPDSWVIDVDQVLENGKRLIETAGLYGIELYLMTKQFGRNPWLAEKLLALGYSG
IVAVDYKEARIMRRTGLPVAHQGHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVTAGRVQPVLLKVYSDDDFLY
PGQESGFAQHSLHEVVAEIQKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLQTLVNARNQLLKSGVVLEQLNAPSATSCT
SLPLLAEYGVTHAEPGHALTGTIPANQQGDQPERIAMLWLSEISHHFRGDSYCYGGGYYRRGHAQHALVFTPENQKITET
NIKTVDDSSIDYTLPLAGEYPVSSAVVLCFRTQIFVTRSDVVLVSGIHRGEPEIVGRYDSLGSSLEA
>Mature_387_residues
MFVEALKRQNPALISAALSLWQQGKIAPDSWVIDVDQVLENGKRLIETAGLYGIELYLMTKQFGRNPWLAEKLLALGYSG
IVAVDYKEARIMRRTGLPVAHQGHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVTAGRVQPVLLKVYSDDDFLY
PGQESGFAQHSLHEVVAEIQKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLQTLVNARNQLLKSGVVLEQLNAPSATSCT
SLPLLAEYGVTHAEPGHALTGTIPANQQGDQPERIAMLWLSEISHHFRGDSYCYGGGYYRRGHAQHALVFTPENQKITET
NIKTVDDSSIDYTLPLAGEYPVSSAVVLCFRTQIFVTRSDVVLVSGIHRGEPEIVGRYDSLGSSLEA

Specific function: Unknown

COG id: COG3457

COG function: function code E; Predicted amino acid racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789782, Length=387, Percent_Identity=93.28165374677, Blast_Score=751, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 42299; Mature: 42299

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVEALKRQNPALISAALSLWQQGKIAPDSWVIDVDQVLENGKRLIETAGLYGIELYLMT
CCHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEHHHHHHCCHHHHHHCCCEEEEEEEEE
KQFGRNPWLAEKLLALGYSGIVAVDYKEARIMRRTGLPVAHQGHLVQIPCHQVADAVEQG
HHHCCCCCHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCEECCCCEEEECHHHHHHHHHCC
TDVITVFTLDKAREVSAAAVTAGRVQPVLLKVYSDDDFLYPGQESGFAQHSLHEVVAEIQ
CCEEEEEEECCCHHHHHHHHHCCCCCEEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHH
KLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLQTLVNARNQLLKSGVVLEQLNAPSATSCT
HCCCCEEECHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCC
SLPLLAEYGVTHAEPGHALTGTIPANQQGDQPERIAMLWLSEISHHFRGDSYCYGGGYYR
CCCHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCEEE
RGHAQHALVFTPENQKITETNIKTVDDSSIDYTLPLAGEYPVSSAVVLCFRTQIFVTRSD
CCCCCEEEEECCCCCEEEECCCEEECCCCCEEEEECCCCCCCHHHEEEEEEEEEEEEECC
VVLVSGIHRGEPEIVGRYDSLGSSLEA
EEEEECCCCCCHHEEECHHHCCCCCCC
>Mature Secondary Structure
MFVEALKRQNPALISAALSLWQQGKIAPDSWVIDVDQVLENGKRLIETAGLYGIELYLMT
CCHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEHHHHHHCCHHHHHHCCCEEEEEEEEE
KQFGRNPWLAEKLLALGYSGIVAVDYKEARIMRRTGLPVAHQGHLVQIPCHQVADAVEQG
HHHCCCCCHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCEECCCCEEEECHHHHHHHHHCC
TDVITVFTLDKAREVSAAAVTAGRVQPVLLKVYSDDDFLYPGQESGFAQHSLHEVVAEIQ
CCEEEEEEECCCHHHHHHHHHCCCCCEEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHH
KLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLQTLVNARNQLLKSGVVLEQLNAPSATSCT
HCCCCEEECHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCC
SLPLLAEYGVTHAEPGHALTGTIPANQQGDQPERIAMLWLSEISHHFRGDSYCYGGGYYR
CCCHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCEEE
RGHAQHALVFTPENQKITETNIKTVDDSSIDYTLPLAGEYPVSSAVVLCFRTQIFVTRSD
CCCCCEEEEECCCCCEEEECCCEEECCCCCEEEEECCCCCCCHHHEEEEEEEEEEEEECC
VVLVSGIHRGEPEIVGRYDSLGSSLEA
EEEEECCCCCCHHEEECHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]