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The map label for this gene is ybjD [C]

Identifier: 218550116

GI number: 218550116

Start: 2868232

End: 2870280

Strand: Direct

Name: ybjD [C]

Synonym: EFER_2804

Alternate gene names: 218550116

Gene position: 2868232-2870280 (Clockwise)

Preceding gene: 218550114

Following gene: 218550117

Centisome position: 62.51

GC content: 32.6

Gene sequence:

>2049_bases
ATGTGTCCCACAAATTACGCGCAAGGGTTTACTTTTCTCTTTAATACCTTGAAATTATTTTATTTTTTTGCTAAATCGTT
GGCTTTGGATTTTAAACAGAAAAAGCAATTTGCTGATGTTATCAGGATGGTTACTCATATGTTTTTAAGCAAATTAAAAA
TAAAAGGCTTTAGATGTTTTAATGATGAATTTAATATTTCATTAAATGAAGGTCTTAGTGTTATTGTAGGTGAAAACGGG
GCTGGGAAATCTGCTATTATAAACTCAATAAGGCAATTATTTATTGATTCAGAATCAGAGCGATATAACATAACAGAAAA
TGATTTTCATAGCCCATTCAGTAATCCTCCAAAAGCAAGTGATTCATTTACAATTAATGCAGAGTTTTCTAATTTAGATG
CAAAGGAGATAATTGCCTTACTTCCTTGGACTGGGAATTCAGATGTAGCTAAATTAAATTTACACGTTGAGAATAAAGAA
ATAAGAGGGAGATATAAAAAATCACTTTGGGGTGGTGATTCGCAAAATTCTCAATTTGATTATGAATTATTAGACCTAAT
TTATTGTATATATCTCCCTCCATTAAGAGATGCAGAATCAAAACTGACCAATGGTCGGCAGTCAAGATTATCGAAACTTT
TAAAAGCTATAAATAGAAAAGATCTTAAAACACTTAAAAAGAGTGGTGGAGTGCATCCTTTAGTAGATAAAGTTAATACC
TTCAATGATGAATTATCAAATAGTGATTTATACAGTATTAAAGCTGCAAACCAATTAATAAAAAACCAGCTACAGAATGC
TATAGGGCTTAATTTTGGGCAGAACACAGCAATTCAATTTGCAGAAAGTGACTTTACTAGAATTGTAGAAAGTTTACGGC
TTATATTTTTCCCTGACTTAACAGAGAATGATACCAAACTTTTTAGAAACTTAGAGCAAAACAGCTTAGGTTATAATAAC
CTCCTTTATATTGCATCTATATTAGCCGAGCTTACTCTAGGCAACGAACAAGAGTCATCTACTTGTAGAGTGTTATTAAT
AGAAGAACCCGAAGCTCATTTGCACCCTCAACTTCAAATAAGATTACTTGAGCATTTAAAAAAAGTATCCGAAGACAAAG
AAAATAATGTTCAAGTAATTGTCACAACTCATTCGACAACTCTTGCTTCTTCAGTCAGTGTTGATTCTATCATTCACTTA
TCCAAATCAACTTCCCCAGTAGCAACACGTATAAAAGACTGTGGATTAGCAAAAAAAAGTCAAGAGTTCATTGATAGATG
GATGGATGTAACTAAATCCAACTTGCTTTTCGCAAGTGGTGTAATTCTCGTTGAGGGTATAGCCGAGCAAATGCTATTGC
CTGTTTTAGCAAAAGAGGCATTAGCTAGTAGAGATGCAGGGAAAAACTCCTTATCAGATTTAGGTGTTTCTGTTATAAAC
CTTAATGGTATCTATTTTAGACACTTCATGGGAATATATTGTAACTTTGCAATCCCAAGTGAAAAGACAAAGCATGAAGG
ATTAAACATACCTGTTCGCTGTGCAGGATTAACAGATCTTGACCCTCCAAAAAAGATAAAAGAATGTGTAGAAGAAAATA
AGTTCATTGAAAAAATAGTTATCCCCCATGATGATGAAATGTATGATGGTACTAATCATGCTATCAAGCTCGTAGGAGAG
ATAAATAGTTCTAAATATGCAAGGCTTTATGTAAGTAAATACAAAACACTTGAATACGATCTGGCAATGACAGGGAATAA
CATTGCTGTTATGTCAACTGTACTTTATGAAATTTGGCCTACAGATGGGGAAATAAAGAAGAAGATAAAAAAAATTATGG
ATGTAAATGACGATTGGTCGAAAAAAAAATCTAGCGAACGAGCTGTGATTGCAAATGAGTTATTACAATATATCGAGAAC
AATGAGTTAGGAAAAGGATATTTCGCACAAAGTCTTTCAGATAACATATTAAATAATAGAGTTAAATTTGAAACACCAGA
ATATATTAAAAATGCTATTCTCTGGGTATGCCAAGATGGAGAGGTATAA

Upstream 100 bases:

>100_bases
ACATCATTCCTCCTGTTCATTTGAAGTCAGGGTACTCTTAAAAAAATAAAATCAATTTACATATTCGTAAAAACGAATAT
GTTTTATGCGTTTTTAAGAG

Downstream 100 bases:

>100_bases
AGATGACGCATTTTAACTCTCAACAGATGGATTATATCGAATCCTCTATTGCCTCTAGTATTTATCTTGAGGCGTGTCCT
GGTAGTGGAAAAACTGAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: ATP-Dependent Endonuclease Of OLD Family; SMC Domain-Containing Protein; Overcoming Lysogenization Defect Protein; RecF/RecN/SMC N Domain Protein; ATP-Dependent Endonuclease; ATP-Dependent Endonuclease OLD Family; SMC Domain Protein; SMC Family Protein; Exonuclease; SMC Protein-Like; Pathogenesis Related Protein; Nucleoside Triphosphate Hydrolase Domain-Containing Protein; OLD Family-Like ATP-Dependent Endonuclease; P-Loop Containing Nucleoside Triphosphate Hydrolase Domain; P-Loop Containing Nucleoside Triphosphate Hydrolase; DNA Helicase Associated Protein; OLD Family Nuclease; Plasmid-Related Protein; Ypothetical Protein YbjD.; Endonuclease

Number of amino acids: Translated: 682; Mature: 682

Protein sequence:

>682_residues
MCPTNYAQGFTFLFNTLKLFYFFAKSLALDFKQKKQFADVIRMVTHMFLSKLKIKGFRCFNDEFNISLNEGLSVIVGENG
AGKSAIINSIRQLFIDSESERYNITENDFHSPFSNPPKASDSFTINAEFSNLDAKEIIALLPWTGNSDVAKLNLHVENKE
IRGRYKKSLWGGDSQNSQFDYELLDLIYCIYLPPLRDAESKLTNGRQSRLSKLLKAINRKDLKTLKKSGGVHPLVDKVNT
FNDELSNSDLYSIKAANQLIKNQLQNAIGLNFGQNTAIQFAESDFTRIVESLRLIFFPDLTENDTKLFRNLEQNSLGYNN
LLYIASILAELTLGNEQESSTCRVLLIEEPEAHLHPQLQIRLLEHLKKVSEDKENNVQVIVTTHSTTLASSVSVDSIIHL
SKSTSPVATRIKDCGLAKKSQEFIDRWMDVTKSNLLFASGVILVEGIAEQMLLPVLAKEALASRDAGKNSLSDLGVSVIN
LNGIYFRHFMGIYCNFAIPSEKTKHEGLNIPVRCAGLTDLDPPKKIKECVEENKFIEKIVIPHDDEMYDGTNHAIKLVGE
INSSKYARLYVSKYKTLEYDLAMTGNNIAVMSTVLYEIWPTDGEIKKKIKKIMDVNDDWSKKKSSERAVIANELLQYIEN
NELGKGYFAQSLSDNILNNRVKFETPEYIKNAILWVCQDGEV

Sequences:

>Translated_682_residues
MCPTNYAQGFTFLFNTLKLFYFFAKSLALDFKQKKQFADVIRMVTHMFLSKLKIKGFRCFNDEFNISLNEGLSVIVGENG
AGKSAIINSIRQLFIDSESERYNITENDFHSPFSNPPKASDSFTINAEFSNLDAKEIIALLPWTGNSDVAKLNLHVENKE
IRGRYKKSLWGGDSQNSQFDYELLDLIYCIYLPPLRDAESKLTNGRQSRLSKLLKAINRKDLKTLKKSGGVHPLVDKVNT
FNDELSNSDLYSIKAANQLIKNQLQNAIGLNFGQNTAIQFAESDFTRIVESLRLIFFPDLTENDTKLFRNLEQNSLGYNN
LLYIASILAELTLGNEQESSTCRVLLIEEPEAHLHPQLQIRLLEHLKKVSEDKENNVQVIVTTHSTTLASSVSVDSIIHL
SKSTSPVATRIKDCGLAKKSQEFIDRWMDVTKSNLLFASGVILVEGIAEQMLLPVLAKEALASRDAGKNSLSDLGVSVIN
LNGIYFRHFMGIYCNFAIPSEKTKHEGLNIPVRCAGLTDLDPPKKIKECVEENKFIEKIVIPHDDEMYDGTNHAIKLVGE
INSSKYARLYVSKYKTLEYDLAMTGNNIAVMSTVLYEIWPTDGEIKKKIKKIMDVNDDWSKKKSSERAVIANELLQYIEN
NELGKGYFAQSLSDNILNNRVKFETPEYIKNAILWVCQDGEV
>Mature_682_residues
MCPTNYAQGFTFLFNTLKLFYFFAKSLALDFKQKKQFADVIRMVTHMFLSKLKIKGFRCFNDEFNISLNEGLSVIVGENG
AGKSAIINSIRQLFIDSESERYNITENDFHSPFSNPPKASDSFTINAEFSNLDAKEIIALLPWTGNSDVAKLNLHVENKE
IRGRYKKSLWGGDSQNSQFDYELLDLIYCIYLPPLRDAESKLTNGRQSRLSKLLKAINRKDLKTLKKSGGVHPLVDKVNT
FNDELSNSDLYSIKAANQLIKNQLQNAIGLNFGQNTAIQFAESDFTRIVESLRLIFFPDLTENDTKLFRNLEQNSLGYNN
LLYIASILAELTLGNEQESSTCRVLLIEEPEAHLHPQLQIRLLEHLKKVSEDKENNVQVIVTTHSTTLASSVSVDSIIHL
SKSTSPVATRIKDCGLAKKSQEFIDRWMDVTKSNLLFASGVILVEGIAEQMLLPVLAKEALASRDAGKNSLSDLGVSVIN
LNGIYFRHFMGIYCNFAIPSEKTKHEGLNIPVRCAGLTDLDPPKKIKECVEENKFIEKIVIPHDDEMYDGTNHAIKLVGE
INSSKYARLYVSKYKTLEYDLAMTGNNIAVMSTVLYEIWPTDGEIKKKIKKIMDVNDDWSKKKSSERAVIANELLQYIEN
NELGKGYFAQSLSDNILNNRVKFETPEYIKNAILWVCQDGEV

Specific function: Unknown

COG id: COG3593

COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 77091; Mature: 77091

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCPTNYAQGFTFLFNTLKLFYFFAKSLALDFKQKKQFADVIRMVTHMFLSKLKIKGFRCF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
NDEFNISLNEGLSVIVGENGAGKSAIINSIRQLFIDSESERYNITENDFHSPFSNPPKAS
CCCCCEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
DSFTINAEFSNLDAKEIIALLPWTGNSDVAKLNLHVENKEIRGRYKKSLWGGDSQNSQFD
CCEEEEEECCCCCHHHEEEEECCCCCCCEEEEEEEEECHHHHHHHHHHHCCCCCCCCCCH
YELLDLIYCIYLPPLRDAESKLTNGRQSRLSKLLKAINRKDLKTLKKSGGVHPLVDKVNT
HHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHH
FNDELSNSDLYSIKAANQLIKNQLQNAIGLNFGQNTAIQFAESDFTRIVESLRLIFFPDL
HHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHEEECCCC
TENDTKLFRNLEQNSLGYNNLLYIASILAELTLGNEQESSTCRVLLIEEPEAHLHPQLQI
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHH
RLLEHLKKVSEDKENNVQVIVTTHSTTLASSVSVDSIIHLSKSTSPVATRIKDCGLAKKS
HHHHHHHHHHCCCCCCEEEEEEECCHHHHHHCCHHHHHEECCCCCHHHHHHHHCCCCHHH
QEFIDRWMDVTKSNLLFASGVILVEGIAEQMLLPVLAKEALASRDAGKNSLSDLGVSVIN
HHHHHHHHHHHHCCEEHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEE
LNGIYFRHFMGIYCNFAIPSEKTKHEGLNIPVRCAGLTDLDPPKKIKECVEENKFIEKIV
ECCHHHHHHHHHHEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCHHHHHEE
IPHDDEMYDGTNHAIKLVGEINSSKYARLYVSKYKTLEYDLAMTGNNIAVMSTVLYEIWP
CCCCCCCCCCCCCEEEEEEECCCCCEEEEEEHHHCEEEEEEEECCCCHHHHHHHHHHHCC
TDGEIKKKIKKIMDVNDDWSKKKSSERAVIANELLQYIENNELGKGYFAQSLSDNILNNR
CCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
VKFETPEYIKNAILWVCQDGEV
CCCCCHHHHHHCEEEEECCCCC
>Mature Secondary Structure
MCPTNYAQGFTFLFNTLKLFYFFAKSLALDFKQKKQFADVIRMVTHMFLSKLKIKGFRCF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
NDEFNISLNEGLSVIVGENGAGKSAIINSIRQLFIDSESERYNITENDFHSPFSNPPKAS
CCCCCEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
DSFTINAEFSNLDAKEIIALLPWTGNSDVAKLNLHVENKEIRGRYKKSLWGGDSQNSQFD
CCEEEEEECCCCCHHHEEEEECCCCCCCEEEEEEEEECHHHHHHHHHHHCCCCCCCCCCH
YELLDLIYCIYLPPLRDAESKLTNGRQSRLSKLLKAINRKDLKTLKKSGGVHPLVDKVNT
HHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHH
FNDELSNSDLYSIKAANQLIKNQLQNAIGLNFGQNTAIQFAESDFTRIVESLRLIFFPDL
HHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHEEECCCC
TENDTKLFRNLEQNSLGYNNLLYIASILAELTLGNEQESSTCRVLLIEEPEAHLHPQLQI
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHH
RLLEHLKKVSEDKENNVQVIVTTHSTTLASSVSVDSIIHLSKSTSPVATRIKDCGLAKKS
HHHHHHHHHHCCCCCCEEEEEEECCHHHHHHCCHHHHHEECCCCCHHHHHHHHCCCCHHH
QEFIDRWMDVTKSNLLFASGVILVEGIAEQMLLPVLAKEALASRDAGKNSLSDLGVSVIN
HHHHHHHHHHHHCCEEHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEE
LNGIYFRHFMGIYCNFAIPSEKTKHEGLNIPVRCAGLTDLDPPKKIKECVEENKFIEKIV
ECCHHHHHHHHHHEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCHHHHHEE
IPHDDEMYDGTNHAIKLVGEINSSKYARLYVSKYKTLEYDLAMTGNNIAVMSTVLYEIWP
CCCCCCCCCCCCCEEEEEEECCCCCEEEEEEHHHCEEEEEEEECCCCHHHHHHHHHHHCC
TDGEIKKKIKKIMDVNDDWSKKKSSERAVIANELLQYIENNELGKGYFAQSLSDNILNNR
CCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
VKFETPEYIKNAILWVCQDGEV
CCCCCHHHHHHCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA