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The map label for this gene is intD [H]

Identifier: 218549990

GI number: 218549990

Start: 2754232

End: 2754492

Strand: Direct

Name: intD [H]

Synonym: EFER_2675

Alternate gene names: 218549990

Gene position: 2754232-2754492 (Clockwise)

Preceding gene: 218549988

Following gene: 218550014

Centisome position: 60.02

GC content: 49.81

Gene sequence:

>261_bases
TTGTGGGAGAGAAATACGAACTCTTTCGAATTGCAAATCATTACCGCTGGGTATCTGTGTACAAGGAAAGCGGCGCTGAG
ACGAGCTGGTATTGATGATTTCAGATTTCACGACTTGAGACACACCTGGGCAAGTTGGCTGGTTCAGGCCGGAGTCCCGT
TGTCAGTATTACAGGAAATGGGAGGCTGGGAGTCTATCGAAATGGTTCGTCGATATGCTCACCTCGCGCCTAACACCTTA
CCGAACACGCACGGCAAATAG

Upstream 100 bases:

>100_bases
CCTATTTATTCCTTCACTTCTATTAACAACGTCAAAAAATAATTTACGTTGGTGATAATTAAAATATATTTTCTCTCCCC
TTTTTAAACAGTATTTATAT

Downstream 100 bases:

>100_bases
ACTCGATCCTGAACCCATCGGTCCCAAATTTGTCCCAGTCAAAAAATAAGGAAGATATTAATGATGTGTAACTTATTGAT
TTAAGTGGTGCCGATAATAG

Product: hypothetical protein

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 86; Mature: 86

Protein sequence:

>86_residues
MWERNTNSFELQIITAGYLCTRKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLAPNTL
PNTHGK

Sequences:

>Translated_86_residues
MWERNTNSFELQIITAGYLCTRKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLAPNTL
PNTHGK
>Mature_86_residues
MWERNTNSFELQIITAGYLCTRKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLAPNTL
PNTHGK

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=57, Percent_Identity=89.4736842105263, Blast_Score=112, Evalue=6e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 9938; Mature: 9938

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWERNTNSFELQIITAGYLCTRKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEM
CCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHC
GGWESIEMVRRYAHLAPNTLPNTHGK
CCCHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MWERNTNSFELQIITAGYLCTRKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEM
CCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHC
GGWESIEMVRRYAHLAPNTLPNTHGK
CCCHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]