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The map label for this gene is ybdG [H]

Identifier: 218549848

GI number: 218549848

Start: 2594706

End: 2595953

Strand: Direct

Name: ybdG [H]

Synonym: EFER_2532

Alternate gene names: 218549848

Gene position: 2594706-2595953 (Clockwise)

Preceding gene: 218549847

Following gene: 218549855

Centisome position: 56.55

GC content: 46.88

Gene sequence:

>1248_bases
ATGCAGGATTTAATATCCCAGGTTGAAGATTTAGCGGGTATTGAGTTTGATCACACCACCTCGATGGTGATGATTTTCGG
TATTATTTTTCTGACTGCCGTTGTAGTGCATATTATTTTGCACTGGGTAGTACTACGGACCTTCGAAAAACGTGCCATCG
CCAGTTCACGGCTATGGTTGCAAATCATTACCCAGAATAAACTCTTCCACCGTTTAGCTTTCACCTTGCAGGGGATTATC
GTCAATATTCAGGCGATATTCTGGCTGCAAAAAGGCACCGAAGCGGCTGATATTCTGACCACCTGCGCGCAGTTGTGGAT
CATGATGTATGCACTGCTTTCAGTCTTCTCGTTGCTGGATGTTATTTTGAATCTGGCGCAGAAATTCCCGGCGGCGTCTC
AGTTACCGCTGAAAGGGATATTTCAGGGGATTAAACTGATCGGCGCGATTCTGGTCGGCATTTTGATGATTTCGCTGCTG
ATTGGTCAATCGCCAGCGATTCTGATCAGCGGTCTTGGTGCAATGGCTGCCGTGCTGATGTTGGTATTTAAAGATCCGAT
TCTTGGTCTGGTGGCAGGTATTCAGCTTTCCGCGAACGATATGCTGAAACTGGGCGACTGGCTGGAGATGCCGAAATACG
GCGCGGATGGCGCGGTGATCGATATTGGGTTAACCACCGTCAAAGTGCGTAACTGGGACAATACCATTACCACTATTCCT
ACCTGGTCTCTGGTTTCTGACTCCTTTAAAAACTGGAGCGGGATGTCAGCATCCGGCGGGCGACGTATTAAACGCAGTAT
CAGCATTGATGTCACCAGTATTCATTTTCTTGATGAAGACGAAATGCAACGTCTGAATAAAGCGCATTTGTTAAAACCTT
ATTTAACCAGCCGCCATCAGGAAATTAATGAGTGGAATCGCCAGCAAGGTTCTACGGAGTCAGTATTAAACCTGCGTCGA
ATGACCAATATTGGAACCTTTCGCGCCTATCTGAACGAATATCTACGTAACCATCCGCGGATTCGTAAAGATATGACCTT
AATGGTGCGCCAACTGGCACCGGGAGATAATGGTTTACCGCTTGAGATCTATGCGTTTACCAACACCGTGGTGTGGCTGG
AATATGAAAGTATTCAGGCTGATATTTTCGACCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGGCTTCATCAGTCG
CCAACCGGCAATGATATTCGCTCCCTGGCAGGTGCATTTAAGCAGTAA

Upstream 100 bases:

>100_bases
TTGCCGGGCATCCGCCCGGCTATTTCCCCTCAGATTATCCTGATTTGCATAACCCTGTTTCAGCCGTCATCATAGGCTAC
TGTTGTATAAAGGAGACGTT

Downstream 100 bases:

>100_bases
TTAAAAAACCGCTCTCATCGAATGGATGAGAGCGGTTTCGGATGGTTGACATCGTTTTGTCGGATGTAGCGTGAACGCCT
TATTTCCGACGCAGCGTTTT

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MQDLISQVEDLAGIEFDHTTSMVMIFGIIFLTAVVVHIILHWVVLRTFEKRAIASSRLWLQIITQNKLFHRLAFTLQGII
VNIQAIFWLQKGTEAADILTTCAQLWIMMYALLSVFSLLDVILNLAQKFPAASQLPLKGIFQGIKLIGAILVGILMISLL
IGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIGLTTVKVRNWDNTITTIP
TWSLVSDSFKNWSGMSASGGRRIKRSISIDVTSIHFLDEDEMQRLNKAHLLKPYLTSRHQEINEWNRQQGSTESVLNLRR
MTNIGTFRAYLNEYLRNHPRIRKDMTLMVRQLAPGDNGLPLEIYAFTNTVVWLEYESIQADIFDHIFAIVEEFGLRLHQS
PTGNDIRSLAGAFKQ

Sequences:

>Translated_415_residues
MQDLISQVEDLAGIEFDHTTSMVMIFGIIFLTAVVVHIILHWVVLRTFEKRAIASSRLWLQIITQNKLFHRLAFTLQGII
VNIQAIFWLQKGTEAADILTTCAQLWIMMYALLSVFSLLDVILNLAQKFPAASQLPLKGIFQGIKLIGAILVGILMISLL
IGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIGLTTVKVRNWDNTITTIP
TWSLVSDSFKNWSGMSASGGRRIKRSISIDVTSIHFLDEDEMQRLNKAHLLKPYLTSRHQEINEWNRQQGSTESVLNLRR
MTNIGTFRAYLNEYLRNHPRIRKDMTLMVRQLAPGDNGLPLEIYAFTNTVVWLEYESIQADIFDHIFAIVEEFGLRLHQS
PTGNDIRSLAGAFKQ
>Mature_415_residues
MQDLISQVEDLAGIEFDHTTSMVMIFGIIFLTAVVVHIILHWVVLRTFEKRAIASSRLWLQIITQNKLFHRLAFTLQGII
VNIQAIFWLQKGTEAADILTTCAQLWIMMYALLSVFSLLDVILNLAQKFPAASQLPLKGIFQGIKLIGAILVGILMISLL
IGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIGLTTVKVRNWDNTITTIP
TWSLVSDSFKNWSGMSASGGRRIKRSISIDVTSIHFLDEDEMQRLNKAHLLKPYLTSRHQEINEWNRQQGSTESVLNLRR
MTNIGTFRAYLNEYLRNHPRIRKDMTLMVRQLAPGDNGLPLEIYAFTNTVVWLEYESIQADIFDHIFAIVEEFGLRLHQS
PTGNDIRSLAGAFKQ

Specific function: Mechanosensitive channel of miniconductance that confers protection against mild hypoosmotic shock. Overexpression confers protection against severe shocks [H]

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1786791, Length=415, Percent_Identity=99.2771084337349, Blast_Score=838, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 46632; Mature: 46632

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDLISQVEDLAGIEFDHTTSMVMIFGIIFLTAVVVHIILHWVVLRTFEKRAIASSRLWL
CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIITQNKLFHRLAFTLQGIIVNIQAIFWLQKGTEAADILTTCAQLWIMMYALLSVFSLLD
HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VILNLAQKFPAASQLPLKGIFQGIKLIGAILVGILMISLLIGQSPAILISGLGAMAAVLM
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIGLTTVKVRNWDNTITTIP
HHHHCHHHHHHHCCEECCCHHHHHHHHHHCCCCCCCCCEEEECEEEEEEECCCCCEEECC
TWSLVSDSFKNWSGMSASGGRRIKRSISIDVTSIHFLDEDEMQRLNKAHLLKPYLTSRHQ
CHHHHHHHHHCCCCCCCCCCHHHHHEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
EINEWNRQQGSTESVLNLRRMTNIGTFRAYLNEYLRNHPRIRKDMTLMVRQLAPGDNGLP
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
LEIYAFTNTVVWLEYESIQADIFDHIFAIVEEFGLRLHQSPTGNDIRSLAGAFKQ
EEEEEEECEEEEEEEHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MQDLISQVEDLAGIEFDHTTSMVMIFGIIFLTAVVVHIILHWVVLRTFEKRAIASSRLWL
CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIITQNKLFHRLAFTLQGIIVNIQAIFWLQKGTEAADILTTCAQLWIMMYALLSVFSLLD
HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VILNLAQKFPAASQLPLKGIFQGIKLIGAILVGILMISLLIGQSPAILISGLGAMAAVLM
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIGLTTVKVRNWDNTITTIP
HHHHCHHHHHHHCCEECCCHHHHHHHHHHCCCCCCCCCEEEECEEEEEEECCCCCEEECC
TWSLVSDSFKNWSGMSASGGRRIKRSISIDVTSIHFLDEDEMQRLNKAHLLKPYLTSRHQ
CHHHHHHHHHCCCCCCCCCCHHHHHEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
EINEWNRQQGSTESVLNLRRMTNIGTFRAYLNEYLRNHPRIRKDMTLMVRQLAPGDNGLP
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
LEIYAFTNTVVWLEYESIQADIFDHIFAIVEEFGLRLHQSPTGNDIRSLAGAFKQ
EEEEEEECEEEEEEEHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7813889 [H]