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The map label for this gene is ybdH [H]

Identifier: 218549812

GI number: 218549812

Start: 2555943

End: 2557031

Strand: Direct

Name: ybdH [H]

Synonym: EFER_2494

Alternate gene names: 218549812

Gene position: 2555943-2557031 (Clockwise)

Preceding gene: 218549810

Following gene: 218549820

Centisome position: 55.7

GC content: 55.74

Gene sequence:

>1089_bases
ATGCCTCACAATCCTATCCGCGTCGTCGTCGGCCCGGCTAACTACTTTTCACATCCCGGAAGTTTCAATCACCTGCAAGA
TTTTTTTACTGATGAACAGCTTTCTCGCGCAGCGTGGATCTACGGCGAACGCGCCATTGCGGCTGCGCAATGCAAACTTC
CGCCAGCGTTTGAACTGCCAGGGGCAAAGCATATTTTGTTTCGCGGTCATTGCAGTGAAAGCGATGTGCAACAACTGGCG
GCTGAGTCCGGTGACGATCGCAGCGTAGTGATTGGCGTCGGCGGCGGCGCACTGCTCGACACCGCGAAAGCCCTCGCCCG
CCGTCTCGGTCTGCCGTTTGTTGCCGTTCCAACGATTGCCGCTACTTGCGCTGCCTGGACACCGCTCTCCGTCTGGTATA
ACGATGCCGGACAGGCGCTACATTATGAGATTTTCGACGACGCCAATTTTATGGTGCTGGTGGAACCGGAGATTATCCTC
AATGCGCCGCAAGAATATCTGCTGGCGGGAATCGGTGACACGCTGGCGAAATGGTATGAAGCGGTGGTGCTGGCCCCACA
ACCAGAAACGTTGCCGCTAACCGTACGGCTGGGGATTAATAATGCGCAGGCCATTCGTGACGTCTTGTTAAGCAGTAGCG
AGCAGGCGCTTGCCGATCAGCAAAATCAGCAGTTAACGCGATCATTTTGCGATGTGGTGGATGCGATTATCGCCGGAGGC
GGAATGGTCGGTGGTCTGGGCGATCGTTTTACGCGTGTGGCGGCGGCCCATGCCGTGCATAACGGTCTGACTGTACTGCC
ACAAACCGAGAAGTTTCTCCACGGCACCAAAGTCGCCTACGGAATTCTGGTGCAAAGCGCCTTGCTGGGTCAGGATGCTG
TGCTGGCACAATTAACCGGGGCGTATCAGCGTTTTCATCTGCCGACCACGCTGGCGGAGCTGGAAGTGGATATCAATGAT
CAGGCGGAGATCGACAAAGTGATTGCCCACACCTTGCGTCCGGCGGAATCCATTCATTACCTGCCGGTCACGCTGACACC
AGATACGTTGCGTGCAGCGTTCGAAAAAGTGGAATCGTTTAAAGTCTGA

Upstream 100 bases:

>100_bases
TGCCTGATGAAGTTGCGTGTTGAAGGCACTATAACACGATGCTAGTATTTGGCAATCAAGACGTTTAGATGTCTAAATAA
AACAATAAGGACAACACAAC

Downstream 100 bases:

>100_bases
CGCACAGATTTAGCAGCAACGCGCGCCGCCTTTTCCACCGTAGCGCGCGTCCTGCCGCTCCCGGAAAAACTCTTCGTAGG
TCATCGGCGTTTGATCAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 361

Protein sequence:

>362_residues
MPHNPIRVVVGPANYFSHPGSFNHLQDFFTDEQLSRAAWIYGERAIAAAQCKLPPAFELPGAKHILFRGHCSESDVQQLA
AESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAVPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIIL
NAPQEYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINNAQAIRDVLLSSSEQALADQQNQQLTRSFCDVVDAIIAGG
GMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDAVLAQLTGAYQRFHLPTTLAELEVDIND
QAEIDKVIAHTLRPAESIHYLPVTLTPDTLRAAFEKVESFKV

Sequences:

>Translated_362_residues
MPHNPIRVVVGPANYFSHPGSFNHLQDFFTDEQLSRAAWIYGERAIAAAQCKLPPAFELPGAKHILFRGHCSESDVQQLA
AESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAVPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIIL
NAPQEYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINNAQAIRDVLLSSSEQALADQQNQQLTRSFCDVVDAIIAGG
GMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDAVLAQLTGAYQRFHLPTTLAELEVDIND
QAEIDKVIAHTLRPAESIHYLPVTLTPDTLRAAFEKVESFKV
>Mature_361_residues
PHNPIRVVVGPANYFSHPGSFNHLQDFFTDEQLSRAAWIYGERAIAAAQCKLPPAFELPGAKHILFRGHCSESDVQQLAA
ESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAVPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIILN
APQEYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINNAQAIRDVLLSSSEQALADQQNQQLTRSFCDVVDAIIAGGG
MVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDAVLAQLTGAYQRFHLPTTLAELEVDINDQ
AEIDKVIAHTLRPAESIHYLPVTLTPDTLRAAFEKVESFKV

Specific function: Unknown

COG id: COG0371

COG function: function code C; Glycerol dehydrogenase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron-containing alcohol dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1786815, Length=361, Percent_Identity=96.398891966759, Blast_Score=692, Evalue=0.0,
Organism=Escherichia coli, GI87082352, Length=359, Percent_Identity=31.4763231197772, Blast_Score=152, Evalue=3e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001670
- InterPro:   IPR018211
- InterPro:   IPR016205 [H]

Pfam domain/function: PF00465 Fe-ADH [H]

EC number: 1.1.-.- [C]

Molecular weight: Translated: 39074; Mature: 38943

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS00913 ADH_IRON_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHNPIRVVVGPANYFSHPGSFNHLQDFFTDEQLSRAAWIYGERAIAAAQCKLPPAFELP
CCCCCEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCCCCC
GAKHILFRGHCSESDVQQLAAESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAVPTIA
CCCEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEHHHHH
ATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIILNAPQEYLLAGIGDTLAKWYE
HHHHCCCCCEEEECCCCCEEEEEEECCCCEEEEECCHHEECCCHHHHHHHHHHHHHHHHH
AVVLAPQPETLPLTVRLGINNAQAIRDVLLSSSEQALADQQNQQLTRSFCDVVDAIIAGG
EEEECCCCCCEEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
GMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDAVLAQLTG
CCCCCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
AYQRFHLPTTLAELEVDINDQAEIDKVIAHTLRPAESIHYLPVTLTPDTLRAAFEKVESF
HHHHHCCCCCHHHEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHC
KV
CC
>Mature Secondary Structure 
PHNPIRVVVGPANYFSHPGSFNHLQDFFTDEQLSRAAWIYGERAIAAAQCKLPPAFELP
CCCCEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCCCCC
GAKHILFRGHCSESDVQQLAAESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAVPTIA
CCCEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEHHHHH
ATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIILNAPQEYLLAGIGDTLAKWYE
HHHHCCCCCEEEECCCCCEEEEEEECCCCEEEEECCHHEECCCHHHHHHHHHHHHHHHHH
AVVLAPQPETLPLTVRLGINNAQAIRDVLLSSSEQALADQQNQQLTRSFCDVVDAIIAGG
EEEECCCCCCEEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
GMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDAVLAQLTG
CCCCCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
AYQRFHLPTTLAELEVDINDQAEIDKVIAHTLRPAESIHYLPVTLTPDTLRAAFEKVESF
HHHHHCCCCCHHHEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHC
KV
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1848300; 7567469 [H]