Click here to switch to the map view.

The map label for this gene is rlpA [H]

Identifier: 218549791

GI number: 218549791

Start: 2536308

End: 2537456

Strand: Direct

Name: rlpA [H]

Synonym: EFER_2472

Alternate gene names: 218549791

Gene position: 2536308-2537456 (Clockwise)

Preceding gene: 218549790

Following gene: 218549792

Centisome position: 55.27

GC content: 53.09

Gene sequence:

>1149_bases
TTGTTATGTCGATCCATACCCACCGAAAAATGTTGTCGAAAAGCGTATAAGGGGTGCGCAATGCGTAAGGAGTGGCTCGG
GATATGCATCGCGGCAGGAATGCTCGCGGCGTGTACAAACGATGATGGTCAGCAACAGACGACAGTACCGCAACCAGCGG
TATGTAATGGCCCGATCGTTGAAATCAGCGGAGCGGAACCTCGTTTCGAATCACCAATTGCGACGGCTAACCAGGATTAT
CAGCGCGACGGTAAGAGCTATAAAATCGTTCAGGACCCTTCACGCTTTAGTCAGGCCGGTCTGGCGGCAATATACGATAC
AGAATCAGGTAGCAATCTGACCGCTTCCGGCGAAATGTTTGATTCGACACAACTCACTGCCGCACATCCCACGTTGCCGA
TTCCCAGCTACGCGCGAATCACTAACCTGGCAAATGGTCGCATGATTGTAGTGCGTATTAATGATCGTGGGCCTTTTGGC
AGTGATCGCGTCATTGCACTTTCGCGTGCAGCGGCAGATCGACTCAATACTTCGAACAACACTAAAGTCCGTGTTGATCC
TATTATTGTGGCGCAGGATGGTTCAATGTCTGGCCCGGGTATGGCCTGTACCACTGTTGCCAAACAAACCTATGTCCTGC
CTCCCCGCCCGGATTTAAGTGGGGGAATGAGCAGCACTTCAACGCCTGACGCAGTACAACCGCAAGGTGATGTCCTGCCG
ATTAGCAACTCTACGTTGCAAAGTGATAATTCACTCGGAGCACCTGTTACCAGCAGTGGTTTTCTTGGTGCTCCCACAAC
GTTAGCACCGGGTGTACTGGAAGGCAGCGAACCAACACCAACTCCTGCACCACAACCCGTTAACACTACGCCAACGTCTA
CCCCGGCGATGATCACCCCGCAGGCCGCGACTCCCGCTGCCAGCAGTGGTTTTATGGTGCAGGTTGGTGCAGTCAGCGAC
CAGTCCCGTGCGCAACAATACCAGCAACAGTTAGCGCAGAAATTTGGCGTGCCGGGGCGAGTAACACAAAATGGCGCGGT
ATGGCGCATTCAGTTAGGACCATTTGCTAACAGAACAGAAGCCAGCGCACTGCAGCAGCGACTGCAATCCGAAGCTCAAT
TACAGTCCTTTATCACCGTTGCGCAATAG

Upstream 100 bases:

>100_bases
ATTGGTATGGTGAGCGGTATTCTGCCAGTTGTTGGCGTACCGCTACCGCTGGTCAGTTATGGAGGCTCAGCACTCATCGT
GCTGATGGCCGGGTTCGGGA

Downstream 100 bases:

>100_bases
CGTAAATCTGGCATCTGAACTGTCAATTTCTGTAAACGACGTTAACAAAGTCACGCGGAAAGTCAGATGCCGGGCGGTAT
AGCGTTTGCTATAGTAGGGC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MLCRSIPTEKCCRKAYKGCAMRKEWLGICIAAGMLAACTNDDGQQQTTVPQPAVCNGPIVEISGAEPRFESPIATANQDY
QRDGKSYKIVQDPSRFSQAGLAAIYDTESGSNLTASGEMFDSTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPFG
SDRVIALSRAAADRLNTSNNTKVRVDPIIVAQDGSMSGPGMACTTVAKQTYVLPPRPDLSGGMSSTSTPDAVQPQGDVLP
ISNSTLQSDNSLGAPVTSSGFLGAPTTLAPGVLEGSEPTPTPAPQPVNTTPTSTPAMITPQAATPAASSGFMVQVGAVSD
QSRAQQYQQQLAQKFGVPGRVTQNGAVWRIQLGPFANRTEASALQQRLQSEAQLQSFITVAQ

Sequences:

>Translated_382_residues
MLCRSIPTEKCCRKAYKGCAMRKEWLGICIAAGMLAACTNDDGQQQTTVPQPAVCNGPIVEISGAEPRFESPIATANQDY
QRDGKSYKIVQDPSRFSQAGLAAIYDTESGSNLTASGEMFDSTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPFG
SDRVIALSRAAADRLNTSNNTKVRVDPIIVAQDGSMSGPGMACTTVAKQTYVLPPRPDLSGGMSSTSTPDAVQPQGDVLP
ISNSTLQSDNSLGAPVTSSGFLGAPTTLAPGVLEGSEPTPTPAPQPVNTTPTSTPAMITPQAATPAASSGFMVQVGAVSD
QSRAQQYQQQLAQKFGVPGRVTQNGAVWRIQLGPFANRTEASALQQRLQSEAQLQSFITVAQ
>Mature_382_residues
MLCRSIPTEKCCRKAYKGCAMRKEWLGICIAAGMLAACTNDDGQQQTTVPQPAVCNGPIVEISGAEPRFESPIATANQDY
QRDGKSYKIVQDPSRFSQAGLAAIYDTESGSNLTASGEMFDSTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPFG
SDRVIALSRAAADRLNTSNNTKVRVDPIIVAQDGSMSGPGMACTTVAKQTYVLPPRPDLSGGMSSTSTPDAVQPQGDVLP
ISNSTLQSDNSLGAPVTSSGFLGAPTTLAPGVLEGSEPTPTPAPQPVNTTPTSTPAMITPQAATPAASSGFMVQVGAVSD
QSRAQQYQQQLAQKFGVPGRVTQNGAVWRIQLGPFANRTEASALQQRLQSEAQLQSFITVAQ

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=367, Percent_Identity=83.1062670299727, Blast_Score=578, Evalue=1e-166,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 40158; Mature: 40158

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCRSIPTEKCCRKAYKGCAMRKEWLGICIAAGMLAACTNDDGQQQTTVPQPAVCNGPIV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE
EISGAEPRFESPIATANQDYQRDGKSYKIVQDPSRFSQAGLAAIYDTESGSNLTASGEMF
EECCCCCCCCCCCCCCCCHHHHCCCCEEEEECHHHHHHCCEEEEEECCCCCCEEECCCCC
DSTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPFGSDRVIALSRAAADRLNTSNN
CCCCEEECCCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEHHHHHHCCCCCC
TKVRVDPIIVAQDGSMSGPGMACTTVAKQTYVLPPRPDLSGGMSSTSTPDAVQPQGDVLP
CEEEEEEEEEECCCCCCCCCCEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEE
ISNSTLQSDNSLGAPVTSSGFLGAPTTLAPGVLEGSEPTPTPAPQPVNTTPTSTPAMITP
CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
QAATPAASSGFMVQVGAVSDQSRAQQYQQQLAQKFGVPGRVTQNGAVWRIQLGPFANRTE
CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCEEEEEECCCCCCHH
ASALQQRLQSEAQLQSFITVAQ
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLCRSIPTEKCCRKAYKGCAMRKEWLGICIAAGMLAACTNDDGQQQTTVPQPAVCNGPIV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE
EISGAEPRFESPIATANQDYQRDGKSYKIVQDPSRFSQAGLAAIYDTESGSNLTASGEMF
EECCCCCCCCCCCCCCCCHHHHCCCCEEEEECHHHHHHCCEEEEEECCCCCCEEECCCCC
DSTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPFGSDRVIALSRAAADRLNTSNN
CCCCEEECCCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEHHHHHHCCCCCC
TKVRVDPIIVAQDGSMSGPGMACTTVAKQTYVLPPRPDLSGGMSSTSTPDAVQPQGDVLP
CEEEEEEEEEECCCCCCCCCCEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEE
ISNSTLQSDNSLGAPVTSSGFLGAPTTLAPGVLEGSEPTPTPAPQPVNTTPTSTPAMITP
CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
QAATPAASSGFMVQVGAVSDQSRAQQYQQQLAQKFGVPGRVTQNGAVWRIQLGPFANRTE
CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCEEEEEECCCCCCHH
ASALQQRLQSEAQLQSFITVAQ
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]