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The map label for this gene is nmpC [H]

Identifier: 218549288

GI number: 218549288

Start: 1996644

End: 1997747

Strand: Direct

Name: nmpC [H]

Synonym: EFER_1949

Alternate gene names: 218549288

Gene position: 1996644-1997747 (Clockwise)

Preceding gene: 218549287

Following gene: 218549289

Centisome position: 43.51

GC content: 46.92

Gene sequence:

>1104_bases
TTGATGATGAAAAAATTAACAGTGGCAGTTTCTGCTGTAGCTGCGTCCATTCTGATGGCGATGTCTGCACAAGCAGCAGA
AATCTATAACAAAGACGGCAATAAGCTGGATCTGTACGGTAAAGTTAATGCTAAGCATTACTTCTCCTCTGAAGCCTCTG
ATGATGGCGACACCACTTATGTTCGTATGGGCTTCAAAGGCGAAACTCAGATCAACGATCAGTTGACTGGTTTCGGTCAG
TGGGAATACGAATTCAAAGGCAACCGTACTGAATCTCAGGGTTCTGATAAAGACAAAACTCGTCTGGCATTTGCTGGTCT
GAAATTCGGTGAATACGGCTCCATCGATTATGGCCGTAACTACGGTGTTGCTTACGACATCGGCGCATGGACCGACGTTC
TGCCAGAATTCGGTGGCGATACCTGGACTCAGACTGATGTATTTATGACTCAGCGTGCGACTGGCGTTGCAACCTACCGT
AACAACGACTTCTTTGGTCTGGTTGACGGCCTGAACTTCGCGGCTCAGTACCAGGGTAAGAATGATCGTACCGATTATGA
GAACTTCTACGAAGGTAACGGTGATGGCTTCGGCTTCTCCACCACTTACGAATACGAAGGCTTCGGCATCGGTGCTACTT
ATGCGAAATCTGATCGTACCGACACTCAGGTTAAAGCGGGTAAAGTGGCACCAGCACTCTATGCTTCTGGTAAAAATGCA
GAAGTTTGGGCTGCTGGTCTGAAATACGACGCGAACAACATTTACCTGGCAACCACCTATTCTGAAACCCAGAATATGAC
TGTCTTCGGTGATCACCTGATCGCAAACAAAGCTCAGAACTTTGAAGCAGTTGCTCAGTACCAGTTCGACTTCGGTCTGC
GTCCGTCCATCGCTTACCTGAAATCCAAAGGTAAAGATCTGGGGGTTTGGGGTGACCAGGATCTGGTTGAATACATCGAC
CTGGGTGCGACCTACTACTTCAACAAAAACATGTCCACTTTTGTTGATTACAAAATTAACCTGATCGATAAGAGCGACTT
CACTAAAGAAGCTGGTGTTGCAACCGACAACATCGTTGCTGTTGGTCTGGTATACCAGTTCTAA

Upstream 100 bases:

>100_bases
TAATACTCTGATATATCTATTTCTTGAAATGAACACATTGGCTAGATGAATATTTGTATGCAGTGACATTTTTATAAAGA
ATTAGTTCAAATAAAAAGGA

Downstream 100 bases:

>100_bases
TCTGGTAACGGCATAATATGTTGGGGAAGGTCAGCCTCCCCAACATATTTTAGTGACTCCCTCAAGTCACTTATCTTAAG
AGACAGTTCCTGTCTCTCAT

Product: outer membrane porin; DLP12 prophage

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MMMKKLTVAVSAVAASILMAMSAQAAEIYNKDGNKLDLYGKVNAKHYFSSEASDDGDTTYVRMGFKGETQINDQLTGFGQ
WEYEFKGNRTESQGSDKDKTRLAFAGLKFGEYGSIDYGRNYGVAYDIGAWTDVLPEFGGDTWTQTDVFMTQRATGVATYR
NNDFFGLVDGLNFAAQYQGKNDRTDYENFYEGNGDGFGFSTTYEYEGFGIGATYAKSDRTDTQVKAGKVAPALYASGKNA
EVWAAGLKYDANNIYLATTYSETQNMTVFGDHLIANKAQNFEAVAQYQFDFGLRPSIAYLKSKGKDLGVWGDQDLVEYID
LGATYYFNKNMSTFVDYKINLIDKSDFTKEAGVATDNIVAVGLVYQF

Sequences:

>Translated_367_residues
MMMKKLTVAVSAVAASILMAMSAQAAEIYNKDGNKLDLYGKVNAKHYFSSEASDDGDTTYVRMGFKGETQINDQLTGFGQ
WEYEFKGNRTESQGSDKDKTRLAFAGLKFGEYGSIDYGRNYGVAYDIGAWTDVLPEFGGDTWTQTDVFMTQRATGVATYR
NNDFFGLVDGLNFAAQYQGKNDRTDYENFYEGNGDGFGFSTTYEYEGFGIGATYAKSDRTDTQVKAGKVAPALYASGKNA
EVWAAGLKYDANNIYLATTYSETQNMTVFGDHLIANKAQNFEAVAQYQFDFGLRPSIAYLKSKGKDLGVWGDQDLVEYID
LGATYYFNKNMSTFVDYKINLIDKSDFTKEAGVATDNIVAVGLVYQF
>Mature_367_residues
MMMKKLTVAVSAVAASILMAMSAQAAEIYNKDGNKLDLYGKVNAKHYFSSEASDDGDTTYVRMGFKGETQINDQLTGFGQ
WEYEFKGNRTESQGSDKDKTRLAFAGLKFGEYGSIDYGRNYGVAYDIGAWTDVLPEFGGDTWTQTDVFMTQRATGVATYR
NNDFFGLVDGLNFAAQYQGKNDRTDYENFYEGNGDGFGFSTTYEYEGFGIGATYAKSDRTDTQVKAGKVAPALYASGKNA
EVWAAGLKYDANNIYLATTYSETQNMTVFGDHLIANKAQNFEAVAQYQFDFGLRPSIAYLKSKGKDLGVWGDQDLVEYID
LGATYYFNKNMSTFVDYKINLIDKSDFTKEAGVATDNIVAVGLVYQF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein. Note=When expressed in mutant CS384 [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1788544, Length=379, Percent_Identity=61.4775725593668, Blast_Score=439, Evalue=1e-124,
Organism=Escherichia coli, GI1786436, Length=367, Percent_Identity=61.3079019073569, Blast_Score=424, Evalue=1e-120,
Organism=Escherichia coli, GI1787641, Length=364, Percent_Identity=62.3626373626374, Blast_Score=424, Evalue=1e-120,
Organism=Escherichia coli, GI1787160, Length=377, Percent_Identity=57.5596816976127, Blast_Score=387, Evalue=1e-109,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 40685; Mature: 40685

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: PS00576 GRAM_NEG_PORIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMMKKLTVAVSAVAASILMAMSAQAAEIYNKDGNKLDLYGKVNAKHYFSSEASDDGDTTY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEECCCCCCCCCEEE
VRMGFKGETQINDQLTGFGQWEYEFKGNRTESQGSDKDKTRLAFAGLKFGEYGSIDYGRN
EEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
YGVAYDIGAWTDVLPEFGGDTWTQTDVFMTQRATGVATYRNNDFFGLVDGLNFAAQYQGK
CCEEEECCCHHHHHHHHCCCCCCCCEEEEEECCCEEEEEECCCEEEEECCCCEEEEECCC
NDRTDYENFYEGNGDGFGFSTTYEYEGFGIGATYAKSDRTDTQVKAGKVAPALYASGKNA
CCCCCCHHHCCCCCCCCCCEEEEEECCEECCCEECCCCCCCCEEECCCCCCEEEECCCCC
EVWAAGLKYDANNIYLATTYSETQNMTVFGDHLIANKAQNFEAVAQYQFDFGLRPSIAYL
EEEEEEEEECCCEEEEEEEECCCCCEEEEECHHHHCCCCCCEEEEEEEECCCCCCCHHHH
KSKGKDLGVWGDQDLVEYIDLGATYYFNKNMSTFVDYKINLIDKSDFTKEAGVATDNIVA
HCCCCCCCCCCCHHHHHHHHCCEEEEECCCCCEEEEEEEEEEECCCCCHHCCCCCCCEEE
VGLVYQF
EEEEEEC
>Mature Secondary Structure
MMMKKLTVAVSAVAASILMAMSAQAAEIYNKDGNKLDLYGKVNAKHYFSSEASDDGDTTY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEECCCCCCCCCEEE
VRMGFKGETQINDQLTGFGQWEYEFKGNRTESQGSDKDKTRLAFAGLKFGEYGSIDYGRN
EEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
YGVAYDIGAWTDVLPEFGGDTWTQTDVFMTQRATGVATYRNNDFFGLVDGLNFAAQYQGK
CCEEEECCCHHHHHHHHCCCCCCCCEEEEEECCCEEEEEECCCEEEEECCCCEEEEECCC
NDRTDYENFYEGNGDGFGFSTTYEYEGFGIGATYAKSDRTDTQVKAGKVAPALYASGKNA
CCCCCCHHHCCCCCCCCCCEEEEEECCEECCCEECCCCCCCCEEECCCCCCEEEECCCCC
EVWAAGLKYDANNIYLATTYSETQNMTVFGDHLIANKAQNFEAVAQYQFDFGLRPSIAYL
EEEEEEEEECCCEEEEEEEECCCCCEEEEECHHHHCCCCCCEEEEEEEECCCCCCCHHHH
KSKGKDLGVWGDQDLVEYIDLGATYYFNKNMSTFVDYKINLIDKSDFTKEAGVATDNIVA
HCCCCCCCCCCCHHHHHHHHCCEEEEECCCCCEEEEEEEEEEECCCCCHHCCCCCCCEEE
VGLVYQF
EEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3017988; 9278503; 8057841; 8648624 [H]