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The map label for this gene is ompD [H]

Identifier: 218549287

GI number: 218549287

Start: 1995018

End: 1996073

Strand: Direct

Name: ompD [H]

Synonym: EFER_1948

Alternate gene names: 218549287

Gene position: 1995018-1996073 (Clockwise)

Preceding gene: 218549283

Following gene: 218549288

Centisome position: 43.48

GC content: 43.37

Gene sequence:

>1056_bases
ATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCATTATTAGTTGCTGGCGCAGCAAATGCGGCTGAAATTTATAACAA
GAATGGTAATAAAGTAGATTTTTACGGCAAGATGGTTGGCGAGCGTATCCTGACTGATCGTGAAAATGGTGAAAAGGGTG
ACAACTCTCAAGATACCTCTTATGCCCGTTTTGGCGTGAAAGGTGAAACTCAAATCAATCCTGAACTGACTGGTTATGGT
CAGTTTGAAGTTGACCTGGAAGCATCTAACGACTCAAACAATGATCAGACTCGTCTGGCATATGCTGGTCTGAGCTACAA
AGATCTTGGTTCTTTTGATTACGGTCGTAACGTCGGTGTTGCTTATGATGCTGAAGCGTTTACTGATATGTTTGTTGAGT
GGGGCGGCGACTCATGGGCAAGCACTGACCTGTTTATGACCAACCGTACCAACGGTGTTGCAACCTATCGTAACACTGAT
TTCTTCGGCATGGTTGAAGGTCTGAATTTTGCTCTGCAATATCAGGGTAAAAATGAAGGCAATAACAGCTCAGCTAATGG
TGACGGTCATGGTTTATCTGCAACTTATACCATTGATGGTTTCTCATTTGCTGGTGCGTATGCAAACTCTGACCGTACTG
ATGCTCAGTCATCTGACCTTAAAGGCGAAAGAGCAGAAGTTTGGGCACTGTCATCAAAATATGATGCGAACAACATTTAT
GCAGCTGTAATGTACGGTGAAACTCACAACATGAACTCCGATGCTGGTAATGTTGTGAACAAAACACAGAACTTCGAAGC
TGTTCTTCAGTACCAGTTTGACTTCGGTTTGCGTCCGTCCATCGGCTACTCCTACTCTAAGGCACTGGATGTTGCAGGTT
ATAAAGACTCTGACCGTCTGAACTACATTGAAATTGGTACATGGTACTACTTCAATAAAAACATGAACGTGTACACTGCT
TACCAAATTAACCTGCTGGATAAGAGCGATTACGTTCTTGATCATGGTTTGAATACCGACGACCAGTTCGCAGTGGGTAT
CGTTTACCAGTTCTAA

Upstream 100 bases:

>100_bases
TAAAATGAACTTCATAGAATAGTATCCAAACGTGCTCTTTTTTGGATAACAGCACTTTATCTATATATTCATAGAAATTA
TTATCACAAGGGAATACATA

Downstream 100 bases:

>100_bases
TTTTCTGCTGCAAAATTCCCCAGCCCGCCATGTGCGGGCTTTTTTCTGTCTGTTATTTGTTATTACGCATTCCTGTAATC
GAAAAGGCTCTCTTTCTCTG

Product: outer membrane protein N

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MKRKVLAMLVPALLVAGAANAAEIYNKNGNKVDFYGKMVGERILTDRENGEKGDNSQDTSYARFGVKGETQINPELTGYG
QFEVDLEASNDSNNDQTRLAYAGLSYKDLGSFDYGRNVGVAYDAEAFTDMFVEWGGDSWASTDLFMTNRTNGVATYRNTD
FFGMVEGLNFALQYQGKNEGNNSSANGDGHGLSATYTIDGFSFAGAYANSDRTDAQSSDLKGERAEVWALSSKYDANNIY
AAVMYGETHNMNSDAGNVVNKTQNFEAVLQYQFDFGLRPSIGYSYSKALDVAGYKDSDRLNYIEIGTWYYFNKNMNVYTA
YQINLLDKSDYVLDHGLNTDDQFAVGIVYQF

Sequences:

>Translated_351_residues
MKRKVLAMLVPALLVAGAANAAEIYNKNGNKVDFYGKMVGERILTDRENGEKGDNSQDTSYARFGVKGETQINPELTGYG
QFEVDLEASNDSNNDQTRLAYAGLSYKDLGSFDYGRNVGVAYDAEAFTDMFVEWGGDSWASTDLFMTNRTNGVATYRNTD
FFGMVEGLNFALQYQGKNEGNNSSANGDGHGLSATYTIDGFSFAGAYANSDRTDAQSSDLKGERAEVWALSSKYDANNIY
AAVMYGETHNMNSDAGNVVNKTQNFEAVLQYQFDFGLRPSIGYSYSKALDVAGYKDSDRLNYIEIGTWYYFNKNMNVYTA
YQINLLDKSDYVLDHGLNTDDQFAVGIVYQF
>Mature_351_residues
MKRKVLAMLVPALLVAGAANAAEIYNKNGNKVDFYGKMVGERILTDRENGEKGDNSQDTSYARFGVKGETQINPELTGYG
QFEVDLEASNDSNNDQTRLAYAGLSYKDLGSFDYGRNVGVAYDAEAFTDMFVEWGGDSWASTDLFMTNRTNGVATYRNTD
FFGMVEGLNFALQYQGKNEGNNSSANGDGHGLSATYTIDGFSFAGAYANSDRTDAQSSDLKGERAEVWALSSKYDANNIY
AAVMYGETHNMNSDAGNVVNKTQNFEAVLQYQFDFGLRPSIGYSYSKALDVAGYKDSDRLNYIEIGTWYYFNKNMNVYTA
YQINLLDKSDYVLDHGLNTDDQFAVGIVYQF

Specific function: Uptake Of Inorganic Phosphate, Phosphorylated Compounds, And Some Other Negatively Charged Solutes. [C]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1786436, Length=359, Percent_Identity=55.4317548746518, Blast_Score=368, Evalue=1e-103,
Organism=Escherichia coli, GI1787160, Length=367, Percent_Identity=54.7683923705722, Blast_Score=353, Evalue=1e-98,
Organism=Escherichia coli, GI1788544, Length=374, Percent_Identity=52.6737967914438, Blast_Score=348, Evalue=3e-97,
Organism=Escherichia coli, GI1787641, Length=383, Percent_Identity=54.0469973890339, Blast_Score=325, Evalue=3e-90,

Paralogues:

None

Copy number: 794 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 38908; Mature: 38908

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKVLAMLVPALLVAGAANAAEIYNKNGNKVDFYGKMVGERILTDRENGEKGDNSQDTS
CCCHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCC
YARFGVKGETQINPELTGYGQFEVDLEASNDSNNDQTRLAYAGLSYKDLGSFDYGRNVGV
EEEECCCCCCEECCCEECCCEEEEEEECCCCCCCCCEEEEEECCCHHHCCCCCCCCCCCE
AYDAEAFTDMFVEWGGDSWASTDLFMTNRTNGVATYRNTDFFGMVEGLNFALQYQGKNEG
EECHHHHHHHHEEECCCCCCCCEEEEEECCCCEEEEECCCEEEEECCCEEEEEECCCCCC
NNSSANGDGHGLSATYTIDGFSFAGAYANSDRTDAQSSDLKGERAEVWALSSKYDANNIY
CCCCCCCCCCCEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEE
AAVMYGETHNMNSDAGNVVNKTQNFEAVLQYQFDFGLRPSIGYSYSKALDVAGYKDSDRL
EEEEECCCCCCCCCCCCHHCCCCCCEEEEEEEECCCCCCCCCCCHHHEEEECCCCCCCCE
NYIEIGTWYYFNKNMNVYTAYQINLLDKSDYVLDHGLNTDDQFAVGIVYQF
EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEEECCCCCCCCEEEEEEEEC
>Mature Secondary Structure
MKRKVLAMLVPALLVAGAANAAEIYNKNGNKVDFYGKMVGERILTDRENGEKGDNSQDTS
CCCHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCC
YARFGVKGETQINPELTGYGQFEVDLEASNDSNNDQTRLAYAGLSYKDLGSFDYGRNVGV
EEEECCCCCCEECCCEECCCEEEEEEECCCCCCCCCEEEEEECCCHHHCCCCCCCCCCCE
AYDAEAFTDMFVEWGGDSWASTDLFMTNRTNGVATYRNTDFFGMVEGLNFALQYQGKNEG
EECHHHHHHHHEEECCCCCCCCEEEEEECCCCEEEEECCCEEEEECCCEEEEEECCCCCC
NNSSANGDGHGLSATYTIDGFSFAGAYANSDRTDAQSSDLKGERAEVWALSSKYDANNIY
CCCCCCCCCCCEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEE
AAVMYGETHNMNSDAGNVVNKTQNFEAVLQYQFDFGLRPSIGYSYSKALDVAGYKDSDRL
EEEEECCCCCCCCCCCCHHCCCCCCEEEEEEEECCCCCCCCCCCHHHEEEECCCCCCCCE
NYIEIGTWYYFNKNMNVYTAYQINLLDKSDYVLDHGLNTDDQFAVGIVYQF
EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEEECCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA