Click here to switch to the map view.

The map label for this gene is fliR [H]

Identifier: 218549275

GI number: 218549275

Start: 1985358

End: 1986161

Strand: Direct

Name: fliR [H]

Synonym: EFER_1935

Alternate gene names: 218549275

Gene position: 1985358-1986161 (Clockwise)

Preceding gene: 218549274

Following gene: 218549276

Centisome position: 43.27

GC content: 47.39

Gene sequence:

>804_bases
TTGGTTAACAACACGATGATTCAACTGACCAGCGACCAATGGATGCAATGGCTGAGCCTCGGGTTTTGGCCACTGTTACG
CGTACTGGCGTTGATCTCCACCGCTCCTATTCTCAGCGAACGCAGTGTGCCCAAACGGGCAAAGCTGGGGCTGGGATTGA
TGATTACACTGGCCATTGCACCGATGCTGCCGCCACACGATGTGCCCATTTTTTCTTATGCTGCCGTCTGGGTAGCGATA
CAGCAGATTTTGATAGGTATTGCGCTGGGCTTTACGATGCAGTTTGCATTTGCCGCTGTACGTACCGCCGGGGAGATTAT
CGGCCTGCAGATGGGGTTATCGTTTGCAACCTTTGTCGATCCTGCCAGTCATCTCAATATGCCCGTGCTGGCGCGCATTC
TGGATATGCTGGTTTTGCTGCTATTTCTGACATTTAACGGTCATTTGTGGTTGATTTCGATTCTTGTCGATACCTTTCAC
ACCTTGCCTATTGGCGGTGAACCGCTAAACAGTAATGCCTTTCTTGCCCTTACCCGTGCTGGTGGATTGATTTTCCTCAA
TGGGTTGATGCTGGCGTTACCGGTGATCACGCTATTATTAACGCTTAATCTGGCATTAGGCTTATTGAATAGAATGGCAC
CGCAGTTATCCGTTTTTGTTATTGGCTTCCCCCTGACACTGACCGTGGGAATTTCATTAATGGCGGCATTAATGCCATTA
ATTGCACCGTTCTGCGAACATTTATTTAGTGAAGTTTTTAATTTATTAGCTGATATTGTCAGCGAGATGCCTGTAAATAA
TTAA

Upstream 100 bases:

>100_bases
ATTGTGGCGGTGTTTATTGCCATTATTGTGGCAGGCCCCTGGATGCTAAGTTTATTGCTGGATTATGTGCGTACCCTTTT
TAGCAATATCCCGTCGTTGA

Downstream 100 bases:

>100_bases
CCATTCTTTTTATAGCATTATCCTAAGGATTATCTGAAAATTAATATCAGCAAACATCCACCAGGATATCGTTGCGTGGG
TTTATTTGTTTTTATCTTCC

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MVNNTMIQLTSDQWMQWLSLGFWPLLRVLALISTAPILSERSVPKRAKLGLGLMITLAIAPMLPPHDVPIFSYAAVWVAI
QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARILDMLVLLLFLTFNGHLWLISILVDTFH
TLPIGGEPLNSNAFLALTRAGGLIFLNGLMLALPVITLLLTLNLALGLLNRMAPQLSVFVIGFPLTLTVGISLMAALMPL
IAPFCEHLFSEVFNLLADIVSEMPVNN

Sequences:

>Translated_267_residues
MVNNTMIQLTSDQWMQWLSLGFWPLLRVLALISTAPILSERSVPKRAKLGLGLMITLAIAPMLPPHDVPIFSYAAVWVAI
QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARILDMLVLLLFLTFNGHLWLISILVDTFH
TLPIGGEPLNSNAFLALTRAGGLIFLNGLMLALPVITLLLTLNLALGLLNRMAPQLSVFVIGFPLTLTVGISLMAALMPL
IAPFCEHLFSEVFNLLADIVSEMPVNN
>Mature_267_residues
MVNNTMIQLTSDQWMQWLSLGFWPLLRVLALISTAPILSERSVPKRAKLGLGLMITLAIAPMLPPHDVPIFSYAAVWVAI
QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARILDMLVLLLFLTFNGHLWLISILVDTFH
TLPIGGEPLNSNAFLALTRAGGLIFLNGLMLALPVITLLLTLNLALGLLNRMAPQLSVFVIGFPLTLTVGISLMAALMPL
IAPFCEHLFSEVFNLLADIVSEMPVNN

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=260, Percent_Identity=88.0769230769231, Blast_Score=418, Evalue=1e-118,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 29039; Mature: 29039

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNNTMIQLTSDQWMQWLSLGFWPLLRVLALISTAPILSERSVPKRAKLGLGLMITLAIA
CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHCHHHHHHHHHH
PMLPPHDVPIFSYAAVWVAIQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC
PASHLNMPVLARILDMLVLLLFLTFNGHLWLISILVDTFHTLPIGGEPLNSNAFLALTRA
CHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC
GGLIFLNGLMLALPVITLLLTLNLALGLLNRMAPQLSVFVIGFPLTLTVGISLMAALMPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEEEEEEHHHHHHHHHHHHHHHHHH
IAPFCEHLFSEVFNLLADIVSEMPVNN
HHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVNNTMIQLTSDQWMQWLSLGFWPLLRVLALISTAPILSERSVPKRAKLGLGLMITLAIA
CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHCHHHHHHHHHH
PMLPPHDVPIFSYAAVWVAIQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC
PASHLNMPVLARILDMLVLLLFLTFNGHLWLISILVDTFHTLPIGGEPLNSNAFLALTRA
CHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC
GGLIFLNGLMLALPVITLLLTLNLALGLLNRMAPQLSVFVIGFPLTLTVGISLMAALMPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEEEEEEHHHHHHHHHHHHHHHHHH
IAPFCEHLFSEVFNLLADIVSEMPVNN
HHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9324257; 11677609 [H]