Click here to switch to the map view.

The map label for this gene is fliN [H]

Identifier: 218549271

GI number: 218549271

Start: 1983573

End: 1983986

Strand: Direct

Name: fliN [H]

Synonym: EFER_1931

Alternate gene names: 218549271

Gene position: 1983573-1983986 (Clockwise)

Preceding gene: 218549270

Following gene: 218549272

Centisome position: 43.23

GC content: 52.42

Gene sequence:

>414_bases
ATGAGTGACATGAATAATCCGGCCGATGAGAACAACGGCGCACTGGACGATCTGTGGGCTGAGGCATTAAGCGAGCAACA
AACAACCAGTAGCAAAAGCGCTACCGATGCGGTGTTCCAGCAACTGGGTGGCGGTGACGTCAGCGGTACGTTGCAGGATA
TCGATCTGATTATGGATATTCCGGTGAAGCTGACGGTGGAGCTGGGCCGTACACGAATGACAATTAAGGAGTTGTTGCGC
CTGACACAAGGTTCTGTAGTAGCTCTGGATGGTCTGGCTGGCGAACCGCTGGATATTCTGATTAATGGTTATCTGATTGC
CCAGGGGGAAGTGGTGGTAGTTGCCGATAAATACGGCGTGCGGATCACCGATATCATTACACCTTCTGAACGTATGCGCC
GCCTGAGCCGTTGA

Upstream 100 bases:

>100_bases
TGCTGACCAGTCAGTACGGTACTCTCAACGGCCAATATGCGTTACGAATTGAACATTTGATTAACCCGATTTTGAATTCT
CTGAACGAGGAACAGCCCAA

Downstream 100 bases:

>100_bases
TATGCAAACCCAGGCCACTGTCGTCCAGCCTTCTGCCACCACAACTCCGTTGCTACAGGTGAGTGGCGCATTGTTTGGCA
TTATTGTGTTGATACTGGCA

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MSDMNNPADENNGALDDLWAEALSEQQTTSSKSATDAVFQQLGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLR
LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR

Sequences:

>Translated_137_residues
MSDMNNPADENNGALDDLWAEALSEQQTTSSKSATDAVFQQLGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLR
LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR
>Mature_136_residues
SDMNNPADENNGALDDLWAEALSEQQTTSSKSATDAVFQQLGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRL
TQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form a switch complex that is proposed to be located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=137, Percent_Identity=94.1605839416058, Blast_Score=261, Evalue=9e-72,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 14817; Mature: 14686

Theoretical pI: Translated: 4.12; Mature: 4.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDMNNPADENNGALDDLWAEALSEQQTTSSKSATDAVFQQLGGGDVSGTLQDIDLIMDI
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHEEECC
PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV
CEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCE
RITDIITPSERMRRLSR
EEEEEECCHHHHHHHCC
>Mature Secondary Structure 
SDMNNPADENNGALDDLWAEALSEQQTTSSKSATDAVFQQLGGGDVSGTLQDIDLIMDI
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHEEECC
PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV
CEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCE
RITDIITPSERMRRLSR
EEEEEECCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2651416; 9097040; 9278503 [H]