Click here to switch to the map view.

The map label for this gene is ycfD [H]

Identifier: 218549149

GI number: 218549149

Start: 1857112

End: 1858233

Strand: Direct

Name: ycfD [H]

Synonym: EFER_1802

Alternate gene names: 218549149

Gene position: 1857112-1858233 (Clockwise)

Preceding gene: 218549148

Following gene: 218549152

Centisome position: 40.47

GC content: 51.34

Gene sequence:

>1122_bases
ATGGAATACCAATTAACCCTCAACTGGCCCGATTTTCTGCAACATCACTGGCAAAAGCGCCCGGTGGTGATAAAACGCGG
CTTTAATAACTTCATCGATCCTATCTCCCCGGACGAACTGGCTGGGCTGGCGATGGAAAGTGAAGTCGATAGCCGTCTTG
TAAATAATCTCGATGGCAAATGGCAAGTCAGTCACGGTCCTTTTGAAAGCTATGATCATTTGGGTGAAACCAACTGGTCA
CTGCTGGTACAAGCCGTCAACCACTGGCATGAGCCTACAGCCGCGCTGATGCGGCCCTTCCGCGAGCTACCGGACTGGCG
TATTGACGATCTCATGATCTCCTTTTCGGTGCCTGGCGGCGGTGTTGGCCCCCATCTCGATCAATATGATGTGTTTATCA
TTCAGGGCACGGGGCGTCGTCGTTGGCGTGTTGGCGAAAAACTGCCGATGAAGCAACATTGCCCACACCCTGACCTGCTG
CAGGTGGAACCATTCGAAGCGATTATTGATGAAGAACTGGAACCAGGCGATATCCTGTACATTCCACCAGGATTTCCGCA
TGAAGGCTATGCGCTGGAAAACGCCATGAACTACTCTGTTGGTTTTCGTGCGCCAAATACCCGTGAGCTAATTAGCGGTT
TTGCTGATTATGTACTGCAACGTGATCTTGGCGGTAATTACTACAGTGATCCTGATCTGCCTTCCCGTAGCCACCCTGCC
GATATCCTGCCTCAGGAGATGGATAAACTGCGCGGAATGATGCTTGATCTCATCAATCAGCCGGAGCATTTCTCCCAGTG
GTTTGGTGAGTTTATTTCTCAGTCACGTCATGAGTTGGATGTTGCACCGCCGGAACCGCCTTACCAACCCGATGAGATTT
ACGATGCGCTTTCCCAGGGCGAGTCATTAGTCCGTCTTGGTGGTCTGCGGGTATTACGTATTGGCGATGATGTCTTTGCC
AATGGCGAGAAAATTGACACTCCACATCGCCAGGCACTGGATGCTCTGGCCAGTCATATTGTCCTGACAGCCGATAACTT
CGGCGATGCGCTGGAAGATCCCTCTTTCCTTGCTATGCTGGCAGCACTGGTAAATAGCGGTTACTGGTTCTTCGAAGGGT
AA

Upstream 100 bases:

>100_bases
AAAATGATTAACCTGCATGTAATAAATATGAGCAGATTGCCCTAATAAGGTTAAGCATCCGTTATAATCGCTGACAGATA
TCAGTCTGTGGATGCTCATT

Downstream 100 bases:

>100_bases
AAAAATGCCTGAGCATCTTTACTGGGCTCAGGCATATCTTATCTCCAGTCACACCATATCCAGTGCCGTTTTGCCTTGCG
GTGCTGGAAAAGCTTTATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MEYQLTLNWPDFLQHHWQKRPVVIKRGFNNFIDPISPDELAGLAMESEVDSRLVNNLDGKWQVSHGPFESYDHLGETNWS
LLVQAVNHWHEPTAALMRPFRELPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLPMKQHCPHPDLL
QVEPFEAIIDEELEPGDILYIPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYVLQRDLGGNYYSDPDLPSRSHPA
DILPQEMDKLRGMMLDLINQPEHFSQWFGEFISQSRHELDVAPPEPPYQPDEIYDALSQGESLVRLGGLRVLRIGDDVFA
NGEKIDTPHRQALDALASHIVLTADNFGDALEDPSFLAMLAALVNSGYWFFEG

Sequences:

>Translated_373_residues
MEYQLTLNWPDFLQHHWQKRPVVIKRGFNNFIDPISPDELAGLAMESEVDSRLVNNLDGKWQVSHGPFESYDHLGETNWS
LLVQAVNHWHEPTAALMRPFRELPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLPMKQHCPHPDLL
QVEPFEAIIDEELEPGDILYIPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYVLQRDLGGNYYSDPDLPSRSHPA
DILPQEMDKLRGMMLDLINQPEHFSQWFGEFISQSRHELDVAPPEPPYQPDEIYDALSQGESLVRLGGLRVLRIGDDVFA
NGEKIDTPHRQALDALASHIVLTADNFGDALEDPSFLAMLAALVNSGYWFFEG
>Mature_373_residues
MEYQLTLNWPDFLQHHWQKRPVVIKRGFNNFIDPISPDELAGLAMESEVDSRLVNNLDGKWQVSHGPFESYDHLGETNWS
LLVQAVNHWHEPTAALMRPFRELPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLPMKQHCPHPDLL
QVEPFEAIIDEELEPGDILYIPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYVLQRDLGGNYYSDPDLPSRSHPA
DILPQEMDKLRGMMLDLINQPEHFSQWFGEFISQSRHELDVAPPEPPYQPDEIYDALSQGESLVRLGGLRVLRIGDDVFA
NGEKIDTPHRQALDALASHIVLTADNFGDALEDPSFLAMLAALVNSGYWFFEG

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=373, Percent_Identity=93.2975871313673, Blast_Score=720, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 42423; Mature: 42423

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYQLTLNWPDFLQHHWQKRPVVIKRGFNNFIDPISPDELAGLAMESEVDSRLVNNLDGK
CCEEEEECCHHHHHHHHCCCCEEEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
WQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRPFRELPDWRIDDLMISFSVPGG
EEECCCCCHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCC
GVGPHLDQYDVFIIQGTGRRRWRVGEKLPMKQHCPHPDLLQVEPFEAIIDEELEPGDILY
CCCCCCCCEEEEEEECCCCCEECCCCCCCHHHCCCCCCCEEECHHHHHHCCCCCCCCEEE
IPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYVLQRDLGGNYYSDPDLPSRSHPA
ECCCCCCCCCCHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
DILPQEMDKLRGMMLDLINQPEHFSQWFGEFISQSRHELDVAPPEPPYQPDEIYDALSQG
HCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHCC
ESLVRLGGLRVLRIGDDVFANGEKIDTPHRQALDALASHIVLTADNFGDALEDPSFLAML
CCEEHHCCEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHH
AALVNSGYWFFEG
HHHHHCCCEEECC
>Mature Secondary Structure
MEYQLTLNWPDFLQHHWQKRPVVIKRGFNNFIDPISPDELAGLAMESEVDSRLVNNLDGK
CCEEEEECCHHHHHHHHCCCCEEEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
WQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRPFRELPDWRIDDLMISFSVPGG
EEECCCCCHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCC
GVGPHLDQYDVFIIQGTGRRRWRVGEKLPMKQHCPHPDLLQVEPFEAIIDEELEPGDILY
CCCCCCCCEEEEEEECCCCCEECCCCCCCHHHCCCCCCCEEECHHHHHHCCCCCCCCEEE
IPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYVLQRDLGGNYYSDPDLPSRSHPA
ECCCCCCCCCCHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
DILPQEMDKLRGMMLDLINQPEHFSQWFGEFISQSRHELDVAPPEPPYQPDEIYDALSQG
HCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHCC
ESLVRLGGLRVLRIGDDVFANGEKIDTPHRQALDALASHIVLTADNFGDALEDPSFLAML
CCEEHHCCEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHH
AALVNSGYWFFEG
HHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]