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The map label for this gene is xp55 [H]

Identifier: 218549131

GI number: 218549131

Start: 1833621

End: 1835207

Strand: Reverse

Name: xp55 [H]

Synonym: EFER_1783

Alternate gene names: 218549131

Gene position: 1835207-1833621 (Counterclockwise)

Preceding gene: 218549132

Following gene: 218549130

Centisome position: 39.99

GC content: 50.47

Gene sequence:

>1587_bases
ATGATTACGGCTAAACGGGCACTGGTGGCATGTGCGCTGACTTTCGCACTCACTTCCTCACTCTACGCAGCAGAACAACC
TCAAGATGGACGTACTCTTAAACTGGCGATTGGTGCTGAACCAACCGAAGGTTTTGATCCCATGCTTGGCTGGAGCCACG
GCAGTTATTTTCTGCTTCATGGCCCGTTGTTAAAGCAGAATGCCGATATGAGTTGGGGGAATTTACTGACTGAGAAAGTT
GCAACCAGTGATGACGGTAAAACCTGGACTCTGACATTAAAGCCCGATCTTCGCTTCTCAGATGGTTCTCCGCTCACTGC
CGAAGACGTTGTTTTTACCTACAATAAAGCCGCGAAAAGCGGTGGGAAAATCGATATGGGGAACTTTAGTAATGCCCGGC
AGATCGATAAACGCACAGTCGAAATCACGCTTAGCCATCCGCAAAGTACCTTCGTAAATGTGCTGGGTTCGTTGGGCATT
GTTCCGGCAAAAGAATATGATGAGAAAACGTTCGCTCAGAAACCTATTGGTGCAGGCCCATATCGACTCGTAAGTTTCCA
GCCAGGACAACAATTGATTGTTGAAGCCAACCCCTGGTATGCCGGAAAGAAAAACGACTTTAATCGACTGGTATTTGTTT
TCCTGGATGAAGATAACGCCTGGGCTGCAGCACGCAGTGGTCAACTGGACCTCGTGCGTATTGCCCCGTCAATGGCTGCC
TCGCCACAGCAAAAAAATCTCAAACTCTGGGTACGTGATAGTGTAGAAAACCGTGGCATTGTTTTTCCAATGGAGCCTGC
CGGCAAAAAAGATGCGAATGGCTATCCTGTTGGTAACGATATCACCGCTGATGTCGCCATCCGTCGGGCGATTAACTACG
CCATTGACCGCAAGCAACTCGCCCAGCAGGTCATGGAAGGTCATGCCATTCCGGCTTATAGCGCAGTTCAGGGACTACCA
TGGCAGAATCCTGCCAGCACATTCAAAGATGGCGACCTCAATAAAGCCCGGGCAATTCTCGATCAGGCTGGCTGGAAAAT
GGGTAAAAACGGCGTACGAGAGAAAGACGGGAAGGCAGCAAATCTTACATTATGGTACGCCAGCGGTGACAGTACCCGTC
AGGATCTGGCGGAAGCCGTCCGCGCAATGCTGCAACCACTGGGGATTGCGGTTTCGTTACAGTCAGGAAGTTGGGAAACG
GTAGAGCGGAATATGCATGCCAATCCGACGCTTTTCGGCTGGGGAAGCCTCGACCCTATGGAGCTGGTTCACCACTATAG
TGGACAGGCTGCGGGTGTCGAATATTACAACCCCGGTTATTACCGCAATACCACCGTTGAACAGCATTTAAAACAGGCGC
TGGATGCACCGGACTGGCAAAAAGCCGTTCCATTCTGGCAGCAGGTTGAATGGGATGGTCAAACCGGTGCGGGGGTACAG
GGGGATGCAGCGTGGGCGTGGTTACTCAATATTCAACACACTTATCTTGCTAATCCATGTATCGACCTGGGTAAAGGCGC
ACCGGAAATTCATGGTAGCTGGTCACTGCTAAATAACTTGTCTGACTGGAAATGGACTTGTCGTTAA

Upstream 100 bases:

>100_bases
GTGTCATATTTTCTATTGACCGGGTCAATCATAATGCCTTCCCAGGCGCCCCGGACATCTGTTGTCAGGGGGATGAATTG
ACGATTGATCGGGAAAAAAA

Downstream 100 bases:

>100_bases
TGATGCGTATTGCCCATCATTTGCTGCGGTTGGTAACTCTGCTAATGCTGGTGGCGGCAGGTACATTTATGCTGCTAAGT
TTCTCGCCCGTTGACCCCAT

Product: substrate-binding transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
MITAKRALVACALTFALTSSLYAAEQPQDGRTLKLAIGAEPTEGFDPMLGWSHGSYFLLHGPLLKQNADMSWGNLLTEKV
ATSDDGKTWTLTLKPDLRFSDGSPLTAEDVVFTYNKAAKSGGKIDMGNFSNARQIDKRTVEITLSHPQSTFVNVLGSLGI
VPAKEYDEKTFAQKPIGAGPYRLVSFQPGQQLIVEANPWYAGKKNDFNRLVFVFLDEDNAWAAARSGQLDLVRIAPSMAA
SPQQKNLKLWVRDSVENRGIVFPMEPAGKKDANGYPVGNDITADVAIRRAINYAIDRKQLAQQVMEGHAIPAYSAVQGLP
WQNPASTFKDGDLNKARAILDQAGWKMGKNGVREKDGKAANLTLWYASGDSTRQDLAEAVRAMLQPLGIAVSLQSGSWET
VERNMHANPTLFGWGSLDPMELVHHYSGQAAGVEYYNPGYYRNTTVEQHLKQALDAPDWQKAVPFWQQVEWDGQTGAGVQ
GDAAWAWLLNIQHTYLANPCIDLGKGAPEIHGSWSLLNNLSDWKWTCR

Sequences:

>Translated_528_residues
MITAKRALVACALTFALTSSLYAAEQPQDGRTLKLAIGAEPTEGFDPMLGWSHGSYFLLHGPLLKQNADMSWGNLLTEKV
ATSDDGKTWTLTLKPDLRFSDGSPLTAEDVVFTYNKAAKSGGKIDMGNFSNARQIDKRTVEITLSHPQSTFVNVLGSLGI
VPAKEYDEKTFAQKPIGAGPYRLVSFQPGQQLIVEANPWYAGKKNDFNRLVFVFLDEDNAWAAARSGQLDLVRIAPSMAA
SPQQKNLKLWVRDSVENRGIVFPMEPAGKKDANGYPVGNDITADVAIRRAINYAIDRKQLAQQVMEGHAIPAYSAVQGLP
WQNPASTFKDGDLNKARAILDQAGWKMGKNGVREKDGKAANLTLWYASGDSTRQDLAEAVRAMLQPLGIAVSLQSGSWET
VERNMHANPTLFGWGSLDPMELVHHYSGQAAGVEYYNPGYYRNTTVEQHLKQALDAPDWQKAVPFWQQVEWDGQTGAGVQ
GDAAWAWLLNIQHTYLANPCIDLGKGAPEIHGSWSLLNNLSDWKWTCR
>Mature_528_residues
MITAKRALVACALTFALTSSLYAAEQPQDGRTLKLAIGAEPTEGFDPMLGWSHGSYFLLHGPLLKQNADMSWGNLLTEKV
ATSDDGKTWTLTLKPDLRFSDGSPLTAEDVVFTYNKAAKSGGKIDMGNFSNARQIDKRTVEITLSHPQSTFVNVLGSLGI
VPAKEYDEKTFAQKPIGAGPYRLVSFQPGQQLIVEANPWYAGKKNDFNRLVFVFLDEDNAWAAARSGQLDLVRIAPSMAA
SPQQKNLKLWVRDSVENRGIVFPMEPAGKKDANGYPVGNDITADVAIRRAINYAIDRKQLAQQVMEGHAIPAYSAVQGLP
WQNPASTFKDGDLNKARAILDQAGWKMGKNGVREKDGKAANLTLWYASGDSTRQDLAEAVRAMLQPLGIAVSLQSGSWET
VERNMHANPTLFGWGSLDPMELVHHYSGQAAGVEYYNPGYYRNTTVEQHLKQALDAPDWQKAVPFWQQVEWDGQTGAGVQ
GDAAWAWLLNIQHTYLANPCIDLGKGAPEIHGSWSLLNNLSDWKWTCR

Specific function: Required for transport of an unidentified substrate [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=439, Percent_Identity=26.1958997722096, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1789887, Length=354, Percent_Identity=25.4237288135593, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1787052, Length=492, Percent_Identity=24.7967479674797, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789966, Length=349, Percent_Identity=25.214899713467, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI87082063, Length=245, Percent_Identity=27.3469387755102, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1787495, Length=360, Percent_Identity=23.0555555555556, Blast_Score=63, Evalue=6e-11,
Organism=Escherichia coli, GI1789397, Length=433, Percent_Identity=23.5565819861432, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 58123; Mature: 58123

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITAKRALVACALTFALTSSLYAAEQPQDGRTLKLAIGAEPTEGFDPMLGWSHGSYFLLH
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEE
GPLLKQNADMSWGNLLTEKVATSDDGKTWTLTLKPDLRFSDGSPLTAEDVVFTYNKAAKS
CCHHCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCEECCCCCCCHHCEEEEECHHHCC
GGKIDMGNFSNARQIDKRTVEITLSHPQSTFVNVLGSLGIVPAKEYDEKTFAQKPIGAGP
CCCEECCCCCCHHHHCCEEEEEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCC
YRLVSFQPGQQLIVEANPWYAGKKNDFNRLVFVFLDEDNAWAAARSGQLDLVRIAPSMAA
EEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCEEEEEECCCCCC
SPQQKNLKLWVRDSVENRGIVFPMEPAGKKDANGYPVGNDITADVAIRRAINYAIDRKQL
CCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
AQQVMEGHAIPAYSAVQGLPWQNPASTFKDGDLNKARAILDQAGWKMGKNGVREKDGKAA
HHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEE
NLTLWYASGDSTRQDLAEAVRAMLQPLGIAVSLQSGSWETVERNMHANPTLFGWGSLDPM
EEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCCCCCCEEECCCCCHH
ELVHHYSGQAAGVEYYNPGYYRNTTVEQHLKQALDAPDWQKAVPFWQQVEWDGQTGAGVQ
HHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCHHHHCCHHHEEECCCCCCCCCC
GDAAWAWLLNIQHTYLANPCIDLGKGAPEIHGSWSLLNNLSDWKWTCR
CCCEEEEEEECCHHHHCCCCHHHCCCCCCCCCCHHHHCCCCCCEEECC
>Mature Secondary Structure
MITAKRALVACALTFALTSSLYAAEQPQDGRTLKLAIGAEPTEGFDPMLGWSHGSYFLLH
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEE
GPLLKQNADMSWGNLLTEKVATSDDGKTWTLTLKPDLRFSDGSPLTAEDVVFTYNKAAKS
CCHHCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCEECCCCCCCHHCEEEEECHHHCC
GGKIDMGNFSNARQIDKRTVEITLSHPQSTFVNVLGSLGIVPAKEYDEKTFAQKPIGAGP
CCCEECCCCCCHHHHCCEEEEEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCC
YRLVSFQPGQQLIVEANPWYAGKKNDFNRLVFVFLDEDNAWAAARSGQLDLVRIAPSMAA
EEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCEEEEEECCCCCC
SPQQKNLKLWVRDSVENRGIVFPMEPAGKKDANGYPVGNDITADVAIRRAINYAIDRKQL
CCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
AQQVMEGHAIPAYSAVQGLPWQNPASTFKDGDLNKARAILDQAGWKMGKNGVREKDGKAA
HHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEE
NLTLWYASGDSTRQDLAEAVRAMLQPLGIAVSLQSGSWETVERNMHANPTLFGWGSLDPM
EEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCCCCCCEEECCCCCHH
ELVHHYSGQAAGVEYYNPGYYRNTTVEQHLKQALDAPDWQKAVPFWQQVEWDGQTGAGVQ
HHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCHHHHCCHHHEEECCCCCCCCCC
GDAAWAWLLNIQHTYLANPCIDLGKGAPEIHGSWSLLNNLSDWKWTCR
CCCEEEEEEECCHHHHCCCCHHHCCCCCCCCCCHHHHCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3453116 [H]