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The map label for this gene is ompW [H]

Identifier: 218549050

GI number: 218549050

Start: 1746252

End: 1746983

Strand: Reverse

Name: ompW [H]

Synonym: EFER_1697

Alternate gene names: 218549050

Gene position: 1746983-1746252 (Counterclockwise)

Preceding gene: 218549055

Following gene: 218549043

Centisome position: 38.07

GC content: 48.09

Gene sequence:

>732_bases
GTGATCTATGTAGGATCATTTGTTACTCCAATGTGGGTATATTCGTCACGTTTTTATAACCATAACGACGGAGCGGATAT
GAAAAAGTTAACAGTGGCGGCTTTGGCAGTAACAACTCTTCTCTCTGGCAGTGCCTTTGCGCATGAAGCAGGCGAATTTT
TTATGCGTGCTGGTTCGGCGACTGTGCGCCCGACAGAAGGTGCGGGCGGGACACTGGGAAGTCTGGGGGGATTTAGTGTA
ACTAATAACACTCAGTTGGGGCTGACCTTCACTTATATGGCGACCGATAACATTGGTGTGGAATTGCTGGCGGCATCGCC
GTTTCGTCATAAGGTTGGCACAGCCACAACTGGAGATATTGCAACAGTCCACCATTTACCGCCAACGCTGATGGCACAAT
GGTATTTTGGCGATTCCGGCAGTAAATTCCGTCCTTACATTGGTGCGGGTATTAATTACACCACCTTTTTTAATAATGAC
TTCAATGACACCGGTGAAGGTCTTGGTTTATCCGACCTTAGTCTGAAAGATTCATGGGGTGTGGCAGGACAAGTCGGTGT
GGATTACCTCATCAACCGTGACTGGCTGCTGAATATGTCGGTTTGGTACATGGATATCGATACCGATGTGAAATATAAAT
CCAACGGCGCAGTGCTGCCTGCAGGACGCTATTCTGACAACGTACGCCTCGACCCGTGGGTATTTATGTTCTCTGCAGGT
TACCGCTTCTAA

Upstream 100 bases:

>100_bases
GGGGAATATATCGAATTTGATTTAAATCATTTTAACTAGGACTTGCAATGCAAGTTATAAATTAATCTGGATCAAAAAAT
GGTGAATTAACAAATGTAAT

Downstream 100 bases:

>100_bases
TTTTTTACCATCAATAAACCGCCAGATGTTTTCTGGCGGTTTGCCTCGTACTAACTGCGCGTCGCTGCTTTCATCGGTTG
TACAAAAGCTTTCAGTACCG

Product: outer membrane protein W

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MIYVGSFVTPMWVYSSRFYNHNDGADMKKLTVAALAVTTLLSGSAFAHEAGEFFMRAGSATVRPTEGAGGTLGSLGGFSV
TNNTQLGLTFTYMATDNIGVELLAASPFRHKVGTATTGDIATVHHLPPTLMAQWYFGDSGSKFRPYIGAGINYTTFFNND
FNDTGEGLGLSDLSLKDSWGVAGQVGVDYLINRDWLLNMSVWYMDIDTDVKYKSNGAVLPAGRYSDNVRLDPWVFMFSAG
YRF

Sequences:

>Translated_243_residues
MIYVGSFVTPMWVYSSRFYNHNDGADMKKLTVAALAVTTLLSGSAFAHEAGEFFMRAGSATVRPTEGAGGTLGSLGGFSV
TNNTQLGLTFTYMATDNIGVELLAASPFRHKVGTATTGDIATVHHLPPTLMAQWYFGDSGSKFRPYIGAGINYTTFFNND
FNDTGEGLGLSDLSLKDSWGVAGQVGVDYLINRDWLLNMSVWYMDIDTDVKYKSNGAVLPAGRYSDNVRLDPWVFMFSAG
YRF
>Mature_243_residues
MIYVGSFVTPMWVYSSRFYNHNDGADMKKLTVAALAVTTLLSGSAFAHEAGEFFMRAGSATVRPTEGAGGTLGSLGGFSV
TNNTQLGLTFTYMATDNIGVELLAASPFRHKVGTATTGDIATVHHLPPTLMAQWYFGDSGSKFRPYIGAGINYTTFFNND
FNDTGEGLGLSDLSLKDSWGVAGQVGVDYLINRDWLLNMSVWYMDIDTDVKYKSNGAVLPAGRYSDNVRLDPWVFMFSAG
YRF

Specific function: Acts as a receptor for colicin S4 [H]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=217, Percent_Identity=86.6359447004608, Blast_Score=380, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 26483; Mature: 26483

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYVGSFVTPMWVYSSRFYNHNDGADMKKLTVAALAVTTLLSGSAFAHEAGEFFMRAGSA
CEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHEECCCC
TVRPTEGAGGTLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAASPFRHKVGTATTGDI
EECCCCCCCCCCCCCCCEEECCCCEEEEEEEEEEECCCCEEEEECCCCHHHCCCCCCCCE
ATVHHLPPTLMAQWYFGDSGSKFRPYIGAGINYTTFFNNDFNDTGEGLGLSDLSLKDSWG
EEEECCCCCCEEEEEECCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
VAGQVGVDYLINRDWLLNMSVWYMDIDTDVKYKSNGAVLPAGRYSDNVRLDPWVFMFSAG
CCCCCCEEEEECCCEEEEEEEEEEEECCCEEECCCCCEEECCCCCCCCEECCEEEEEECC
YRF
CCC
>Mature Secondary Structure
MIYVGSFVTPMWVYSSRFYNHNDGADMKKLTVAALAVTTLLSGSAFAHEAGEFFMRAGSA
CEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHEECCCC
TVRPTEGAGGTLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAASPFRHKVGTATTGDI
EECCCCCCCCCCCCCCCEEECCCCEEEEEEEEEEECCCCEEEEECCCCHHHCCCCCCCCE
ATVHHLPPTLMAQWYFGDSGSKFRPYIGAGINYTTFFNNDFNDTGEGLGLSDLSLKDSWG
EEEECCCCCCEEEEEECCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
VAGQVGVDYLINRDWLLNMSVWYMDIDTDVKYKSNGAVLPAGRYSDNVRLDPWVFMFSAG
CCCCCCEEEEECCCEEEEEEEEEEEECCCEEECCCCCEEECCCCCCCCEECCEEEEEECC
YRF
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3058546; 9097039; 9278503; 9629924; 10348872 [H]