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The map label for this gene is ydcF [H]

Identifier: 218548938

GI number: 218548938

Start: 1625791

End: 1626591

Strand: Reverse

Name: ydcF [H]

Synonym: EFER_1586

Alternate gene names: 218548938

Gene position: 1626591-1625791 (Counterclockwise)

Preceding gene: 218548939

Following gene: 218548936

Centisome position: 35.45

GC content: 50.56

Gene sequence:

>801_bases
ATGAACAATACCCCGTTTCCGACGCTTTCGACGGCAACCATAGATGCCATAAATGTTATCGGACAGTGGCTGGCGCAGGA
TGATTTCTCCGGAGAGGAGCCATATCAGGCCGATTGCGTGATCCTTGCAGGCAATGCGGTTATGCCGACTATCGACGCCG
CCTGCAAAATTGCCAGGGATCAGCAAATTCCCTTACTAATCAGTGGTGGTATCGGCCATTCCACGACTTTCCTTTATAGC
GCCATTGCGCAACATCCCCAATACAACACTATCCGTACCACGGGAAGAGCAGAAGCAAGCATCCTGGCGGACATTGCTCA
TCAGTTCTGGCAAATTCCGCATGAAAAGATCTGGGTAGAGGATCAGTCGACCAACTGTGGTGAAAATGCCCGCTTTAGCG
TGGCGCTGATTAGTCAGGCGGCGCAAAATATTCATACGGCGATTGTGGTTCAGGATCCCACCATGCAGCGGAGGACTATG
GCAACTTTTCGCCGTGTAACGGGTGATAACCCCGACGCTCCACGCTGGTTGAGCTGCCCTGGCTTTATACCGCAATTGCA
GCTTGTTAATACCAGACCCGAGTTTGTGGGTGGGAATAGTGGCATATGGACGATCGACCGTTATCTGTCGCTGCTAACAG
GAGAATTACCACGCTTGCATGATGATGAAAATGGCTACGGCCCACGTGGACGTGATTTCATTGTTCATGTGGAAATTCCA
CACGAAGTTGAGACAGCCTGGCAAGTGATACAACACGATGAAACACTGATGGATGCGATAAACAGCCGTTCATTACGTTA
A

Upstream 100 bases:

>100_bases
CGCGATGGCACGATAGAAAAAGCATCAACTACCTTTCAGATGGCTCCGCTTCTCATTATTATCTCACGCAGTATTCTTAA
GGGAACGATAAGGAGGAACC

Downstream 100 bases:

>100_bases
GTGGCTAACTTGTTTGCCGGGTAATGCTCTTTATTACCCGGCTTTCGGTTTAAAGCTTGATGAATTTTTCTAAAGTACGC
ACCAGCTGTGTCACGAATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MNNTPFPTLSTATIDAINVIGQWLAQDDFSGEEPYQADCVILAGNAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYS
AIAQHPQYNTIRTTGRAEASILADIAHQFWQIPHEKIWVEDQSTNCGENARFSVALISQAAQNIHTAIVVQDPTMQRRTM
ATFRRVTGDNPDAPRWLSCPGFIPQLQLVNTRPEFVGGNSGIWTIDRYLSLLTGELPRLHDDENGYGPRGRDFIVHVEIP
HEVETAWQVIQHDETLMDAINSRSLR

Sequences:

>Translated_266_residues
MNNTPFPTLSTATIDAINVIGQWLAQDDFSGEEPYQADCVILAGNAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYS
AIAQHPQYNTIRTTGRAEASILADIAHQFWQIPHEKIWVEDQSTNCGENARFSVALISQAAQNIHTAIVVQDPTMQRRTM
ATFRRVTGDNPDAPRWLSCPGFIPQLQLVNTRPEFVGGNSGIWTIDRYLSLLTGELPRLHDDENGYGPRGRDFIVHVEIP
HEVETAWQVIQHDETLMDAINSRSLR
>Mature_266_residues
MNNTPFPTLSTATIDAINVIGQWLAQDDFSGEEPYQADCVILAGNAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYS
AIAQHPQYNTIRTTGRAEASILADIAHQFWQIPHEKIWVEDQSTNCGENARFSVALISQAAQNIHTAIVVQDPTMQRRTM
ATFRRVTGDNPDAPRWLSCPGFIPQLQLVNTRPEFVGGNSGIWTIDRYLSLLTGELPRLHDDENGYGPRGRDFIVHVEIP
HEVETAWQVIQHDETLMDAINSRSLR

Specific function: Binds S-adenosyl-L-methionine (AdoMet) [H]

COG id: COG1434

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To S.coelicolor SCO4629 [H]

Homologues:

Organism=Escherichia coli, GI1787683, Length=266, Percent_Identity=80.8270676691729, Blast_Score=451, Evalue=1e-128,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003848
- InterPro:   IPR014729 [H]

Pfam domain/function: PF02698 DUF218 [H]

EC number: NA

Molecular weight: Translated: 29585; Mature: 29585

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNTPFPTLSTATIDAINVIGQWLAQDDFSGEEPYQADCVILAGNAVMPTIDAACKIARD
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCC
QQIPLLISGGIGHSTTFLYSAIAQHPQYNTIRTTGRAEASILADIAHQFWQIPHEKIWVE
CCCCEEEECCCCCHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCEEEEE
DQSTNCGENARFSVALISQAAQNIHTAIVVQDPTMQRRTMATFRRVTGDNPDAPRWLSCP
CCCCCCCCCCEEEHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEECCC
GFIPQLQLVNTRPEFVGGNSGIWTIDRYLSLLTGELPRLHDDENGYGPRGRDFIVHVEIP
CCCCCEEEECCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECC
HEVETAWQVIQHDETLMDAINSRSLR
CHHHHHHHHHHCCHHHHHHHHCCCCC
>Mature Secondary Structure
MNNTPFPTLSTATIDAINVIGQWLAQDDFSGEEPYQADCVILAGNAVMPTIDAACKIARD
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCC
QQIPLLISGGIGHSTTFLYSAIAQHPQYNTIRTTGRAEASILADIAHQFWQIPHEKIWVE
CCCCEEEECCCCCHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCEEEEE
DQSTNCGENARFSVALISQAAQNIHTAIVVQDPTMQRRTMATFRRVTGDNPDAPRWLSCP
CCCCCCCCCCEEEHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEECCC
GFIPQLQLVNTRPEFVGGNSGIWTIDRYLSLLTGELPRLHDDENGYGPRGRDFIVHVEIP
CCCCCEEEECCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECC
HEVETAWQVIQHDETLMDAINSRSLR
CHHHHHHHHHHCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10493123 [H]