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The map label for this gene is lsrB [H]

Identifier: 218548916

GI number: 218548916

Start: 1592333

End: 1593355

Strand: Reverse

Name: lsrB [H]

Synonym: EFER_1561

Alternate gene names: 218548916

Gene position: 1593355-1592333 (Counterclockwise)

Preceding gene: 218548917

Following gene: 218548915

Centisome position: 34.72

GC content: 49.76

Gene sequence:

>1023_bases
ATGACACTTCATCGCCTTAAGAAAATCGCCTTACTTAGTGCCCTTGGCATTGCCGCAATTTCTGTGAATGTACAGGCCGC
CGAGCGTATTGCTTTTATTCCCAAACTGGTTGGTGTGGGATTTTTTACCAGTGGCGGTAATGGTGCTCAACAAGCTGGTA
AAGAGTTGGGTGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTAATTAATAACTTC
GTCAACCAGGGGTATAACGCCATTATCGTCTCTGCGGTGTCGCCCGATGGCTTGTGTCCTGCGCTGAAACGTGCGATGCA
GCGTGGAGTGAAAGTACTGACCTGGGACTCTGATACCAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAACGCCCG
CCCAGTTGGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCA
AGCCCCACCGTTACGGACCAAAACCAGTGGGTGAAAGAGGCGAAAGCGAAAATCGCCAAAGACCATCCAGGCTGGGAAAT
TGTCACTACGCAGTTTGGCTATAACGATGCCACTAAATCGTTACAAACCGCAGAAGGAATATTAAAAGCCTATAGCGATC
TCGACGCCATTATCGCCCCGGACGCCAACGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACCTGAATAATGACAAAGTT
GCGATTGTCGGATTCAGTACGCCAAACGTGATGCGCCCGTATGTAGAGCGCGGCACGGTGAAAGAATTTGGCCTGTGGGA
TGTGGTTCAGCAAGGCAAAATTTCAGTTTATGTCGCGGATGCATTATTGAAAAAAGGATCAATGAAAACGGGCGACAAGC
TGAATATTCAGGGCGTAGGTCAGGTTGAAGTCTCGCCAAACAGCGTTCAGGGCTATGACTACGAAGCGGATGGTAATGGC
ATCGTACTGTTACCGGAGCGCGTGATATTCAACAAAGAGAATATCGGCAAATACGATTTCTGA

Upstream 100 bases:

>100_bases
TCGTCGTTGTCGTAGGTCGTTCCGTTAGCCTGCATCGCCAGCAAATTAAAGAGTGGCTGGCGCGCCGGGCCAATAACACA
TTGCCATAAAGGATATCTTC

Downstream 100 bases:

>100_bases
TGTGCATTACTTAACCGGAGTACGTTATGGCAGATTTAGACGATATTAAAGATGGTAAAGATTTTCGCACCGATCAACCG
CAACAAAATATCCCTTTTAC

Product: AI2 ABC transporter periplasmic-binding protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MTLHRLKKIALLSALGIAAISVNVQAAERIAFIPKLVGVGFFTSGGNGAQQAGKELGVDVTYDGPTEPSVSGQVQLINNF
VNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPAQLGGMLVDMAARQVNKDKAKVAFFYS
SPTVTDQNQWVKEAKAKIAKDHPGWEIVTTQFGYNDATKSLQTAEGILKAYSDLDAIIAPDANALPAAAQAAENLNNDKV
AIVGFSTPNVMRPYVERGTVKEFGLWDVVQQGKISVYVADALLKKGSMKTGDKLNIQGVGQVEVSPNSVQGYDYEADGNG
IVLLPERVIFNKENIGKYDF

Sequences:

>Translated_340_residues
MTLHRLKKIALLSALGIAAISVNVQAAERIAFIPKLVGVGFFTSGGNGAQQAGKELGVDVTYDGPTEPSVSGQVQLINNF
VNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPAQLGGMLVDMAARQVNKDKAKVAFFYS
SPTVTDQNQWVKEAKAKIAKDHPGWEIVTTQFGYNDATKSLQTAEGILKAYSDLDAIIAPDANALPAAAQAAENLNNDKV
AIVGFSTPNVMRPYVERGTVKEFGLWDVVQQGKISVYVADALLKKGSMKTGDKLNIQGVGQVEVSPNSVQGYDYEADGNG
IVLLPERVIFNKENIGKYDF
>Mature_339_residues
TLHRLKKIALLSALGIAAISVNVQAAERIAFIPKLVGVGFFTSGGNGAQQAGKELGVDVTYDGPTEPSVSGQVQLINNFV
NQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPAQLGGMLVDMAARQVNKDKAKVAFFYSS
PTVTDQNQWVKEAKAKIAKDHPGWEIVTTQFGYNDATKSLQTAEGILKAYSDLDAIIAPDANALPAAAQAAENLNNDKVA
IVGFSTPNVMRPYVERGTVKEFGLWDVVQQGKISVYVADALLKKGSMKTGDKLNIQGVGQVEVSPNSVQGYDYEADGNGI
VLLPERVIFNKENIGKYDF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=340, Percent_Identity=97.9411764705882, Blast_Score=660, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36562; Mature: 36431

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLHRLKKIALLSALGIAAISVNVQAAERIAFIPKLVGVGFFTSGGNGAQQAGKELGVDV
CCHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHCCEE
TYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTK
EECCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEECCCCC
PECRSYYINQGTPAQLGGMLVDMAARQVNKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAK
CHHHEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHC
DHPGWEIVTTQFGYNDATKSLQTAEGILKAYSDLDAIIAPDANALPAAAQAAENLNNDKV
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHCCCCCEE
AIVGFSTPNVMRPYVERGTVKEFGLWDVVQQGKISVYVADALLKKGSMKTGDKLNIQGVG
EEEEECCCCHHHHHHHCCCCHHCCHHHHHHCCCEEEEEEHHHHHCCCCCCCCEEEEEECE
QVEVSPNSVQGYDYEADGNGIVLLPERVIFNKENIGKYDF
EEEECCCCCCCCEEECCCCCEEEECCCEEECCCCCCCCCC
>Mature Secondary Structure 
TLHRLKKIALLSALGIAAISVNVQAAERIAFIPKLVGVGFFTSGGNGAQQAGKELGVDV
CHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHCCEE
TYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTK
EECCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEECCCCC
PECRSYYINQGTPAQLGGMLVDMAARQVNKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAK
CHHHEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHC
DHPGWEIVTTQFGYNDATKSLQTAEGILKAYSDLDAIIAPDANALPAAAQAAENLNNDKV
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHCCCCCEE
AIVGFSTPNVMRPYVERGTVKEFGLWDVVQQGKISVYVADALLKKGSMKTGDKLNIQGVG
EEEEECCCCHHHHHHHCCCCHHCCHHHHHHCCCEEEEEEHHHHHCCCCCCCCEEEEEECE
QVEVSPNSVQGYDYEADGNGIVLLPERVIFNKENIGKYDF
EEEECCCCCCCCEEECCCCCEEEECCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA