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The map label for this gene is ydcJ [H]

Identifier: 218548858

GI number: 218548858

Start: 1537855

End: 1539198

Strand: Direct

Name: ydcJ [H]

Synonym: EFER_1503

Alternate gene names: 218548858

Gene position: 1537855-1539198 (Clockwise)

Preceding gene: 218548854

Following gene: 218548859

Centisome position: 33.51

GC content: 49.93

Gene sequence:

>1344_bases
ATGGCGTGCATCCTCACGGCCGATGAGATTCGGGAACAATTTTCACAAGCGATGTCAGCCATGTACCAGCAAGAAGTTCC
GCAGTACGGCACACTTCTCGAACTGGTGGCAGACGTCAATCTGGCGGTACTGGAAAACAATCCTGAGCTGCACGAAAAGC
TCGCCAATGCCGATGAACTGGCACGGCTTAATGTCGAACGCCACGGCGCGATTCGTGTCGGAACGGCAGAGGAGCTGACA
ACGTTACGGCGAATTTTTGCCATTATGGGAATGTATCCGGTCAGCTATTACGATCTTTCGCAAGCGGGTGTGCCTGTCCA
TTCCACAGCTTTTCGACCGGTTGATGATGCATCGTTGTCGCGAAATCCTTTTCGCGTATTCACTTCACTTTTGCGTCTGG
AGTTGATTGAAGATAAAGCTCTGCGTCAACGAGCTGACGAAATTCTTCAACAGCGCGATATTTTTACCTCCCGATGCCGG
GAGTTACTTGATAAATATGATGAAGAAGGAGGATTCACCGAAGCACTGGCGACAGAGTTTGTAAAAGAAGCACTGGAAAC
CTTCCGCTGGCATCAGTCTGCAACTGTTGATGAAGAAACTTATCAGGCATTACTACACGAACATCGGTTGATTGCCGATG
TGGTGTGTTTCCCTGGCTGCCATATCAACCATTTAACACCACGAACGCTGGATATTGATCGCGTTCAATCGATGATGCCG
GAATACGGGATCGAACCGAAAGTTCTGATCGAAGGTCCGCCGCGTCGGGAAGTTCCCATCTTGTTACGCCAGACCAGTTT
TAAAGCGCTTGAAGAACCGGTGCTATTTGCAGGCGAAAAACAGGGTACACATACCGCGCGATTTGGTGAAATTGAGCAAC
GAGGAGTAGCGTTAACGCCAAAAGGGCGGCAGCTTTACGATACGCTGTTACAAAAAGCGGGCACGGGTAAAGACAATCTC
ACTCACCAGTTGCATTTACAGGATGTCTTCAAAGCTTTCCCTGATAGCGAGTTTTTGCTGCGTCAACAGGGGCTGGCATG
GTTTCGCTATCGCCTGACACCAACGGGGGAAGCACACCGTCAGGCCATACATCCAGGTGATGATCCTCAGCCTTTAATTG
AACGCGGTTGGTTGGTGGCACAACCAGTCACCTATGAAGATTTTTTACCCGTCAGTGCCGCGGGCATTTTCCAGTCAAAT
CTGGGTAATGAAACACAGGTCAGAAGCCACGGGAATGCCAGTCGGCAGGCCTTTGAACAGGCATTAGGATGCCCGGTCTA
TGATGAATTTGTCCTTTACCAGCGAACCGAAGAACGCAGTAAACGACGTTGTGGGTTGTTGTAA

Upstream 100 bases:

>100_bases
AGAGAGTGAATTCAGCAGAGATCACACTTTGTAAATTCTTCCCACCAGCGACAATGGCGTTTCCTACACTCCAGGTAACA
CTCACTGGAGATATGACAAA

Downstream 100 bases:

>100_bases
TTCAGGATTCAGGTGCAGAAAGATATTTATACTCTAAATAATGCGAATTGTAGTACATGCAACTCAAAGTATGACGAGCA
TAAGCTTCTTGCACCTGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MACILTADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVLENNPELHEKLANADELARLNVERHGAIRVGTAEELT
TLRRIFAIMGMYPVSYYDLSQAGVPVHSTAFRPVDDASLSRNPFRVFTSLLRLELIEDKALRQRADEILQQRDIFTSRCR
ELLDKYDEEGGFTEALATEFVKEALETFRWHQSATVDEETYQALLHEHRLIADVVCFPGCHINHLTPRTLDIDRVQSMMP
EYGIEPKVLIEGPPRREVPILLRQTSFKALEEPVLFAGEKQGTHTARFGEIEQRGVALTPKGRQLYDTLLQKAGTGKDNL
THQLHLQDVFKAFPDSEFLLRQQGLAWFRYRLTPTGEAHRQAIHPGDDPQPLIERGWLVAQPVTYEDFLPVSAAGIFQSN
LGNETQVRSHGNASRQAFEQALGCPVYDEFVLYQRTEERSKRRCGLL

Sequences:

>Translated_447_residues
MACILTADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVLENNPELHEKLANADELARLNVERHGAIRVGTAEELT
TLRRIFAIMGMYPVSYYDLSQAGVPVHSTAFRPVDDASLSRNPFRVFTSLLRLELIEDKALRQRADEILQQRDIFTSRCR
ELLDKYDEEGGFTEALATEFVKEALETFRWHQSATVDEETYQALLHEHRLIADVVCFPGCHINHLTPRTLDIDRVQSMMP
EYGIEPKVLIEGPPRREVPILLRQTSFKALEEPVLFAGEKQGTHTARFGEIEQRGVALTPKGRQLYDTLLQKAGTGKDNL
THQLHLQDVFKAFPDSEFLLRQQGLAWFRYRLTPTGEAHRQAIHPGDDPQPLIERGWLVAQPVTYEDFLPVSAAGIFQSN
LGNETQVRSHGNASRQAFEQALGCPVYDEFVLYQRTEERSKRRCGLL
>Mature_446_residues
ACILTADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVLENNPELHEKLANADELARLNVERHGAIRVGTAEELTT
LRRIFAIMGMYPVSYYDLSQAGVPVHSTAFRPVDDASLSRNPFRVFTSLLRLELIEDKALRQRADEILQQRDIFTSRCRE
LLDKYDEEGGFTEALATEFVKEALETFRWHQSATVDEETYQALLHEHRLIADVVCFPGCHINHLTPRTLDIDRVQSMMPE
YGIEPKVLIEGPPRREVPILLRQTSFKALEEPVLFAGEKQGTHTARFGEIEQRGVALTPKGRQLYDTLLQKAGTGKDNLT
HQLHLQDVFKAFPDSEFLLRQQGLAWFRYRLTPTGEAHRQAIHPGDDPQPLIERGWLVAQPVTYEDFLPVSAAGIFQSNL
GNETQVRSHGNASRQAFEQALGCPVYDEFVLYQRTEERSKRRCGLL

Specific function: Unknown

COG id: COG5383

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv3292 [H]

Homologues:

Organism=Escherichia coli, GI1787692, Length=447, Percent_Identity=87.6957494407159, Blast_Score=827, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009770 [H]

Pfam domain/function: PF07063 DUF1338 [H]

EC number: NA

Molecular weight: Translated: 50874; Mature: 50743

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MACILTADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVLENNPELHEKLANADEL
CEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCHHHHHHHCCHHHH
ARLNVERHGAIRVGTAEELTTLRRIFAIMGMYPVSYYDLSQAGVPVHSTAFRPVDDASLS
HHHCHHHCCCEEECCHHHHHHHHHHHHHHHCCCCCCEEHHHCCCCCCCCCCCCCCCCCCC
RNPFRVFTSLLRLELIEDKALRQRADEILQQRDIFTSRCRELLDKYDEEGGFTEALATEF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
VKEALETFRWHQSATVDEETYQALLHEHRLIADVVCFPGCHINHLTPRTLDIDRVQSMMP
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
EYGIEPKVLIEGPPRREVPILLRQTSFKALEEPVLFAGEKQGTHTARFGEIEQRGVALTP
HHCCCCEEEECCCCCCCCCCEEEHHHHHHHHCCHHCCCCCCCCCCHHCCCHHHCCEEECC
KGRQLYDTLLQKAGTGKDNLTHQLHLQDVFKAFPDSEFLLRQQGLAWFRYRLTPTGEAHR
CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCEEEEEEECCCCHHHH
QAIHPGDDPQPLIERGWLVAQPVTYEDFLPVSAAGIFQSNLGNETQVRSHGNASRQAFEQ
HCCCCCCCCCHHHHCCCEEECCCCHHHCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHH
ALGCPVYDEFVLYQRTEERSKRRCGLL
HHCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ACILTADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVLENNPELHEKLANADEL
EEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCHHHHHHHCCHHHH
ARLNVERHGAIRVGTAEELTTLRRIFAIMGMYPVSYYDLSQAGVPVHSTAFRPVDDASLS
HHHCHHHCCCEEECCHHHHHHHHHHHHHHHCCCCCCEEHHHCCCCCCCCCCCCCCCCCCC
RNPFRVFTSLLRLELIEDKALRQRADEILQQRDIFTSRCRELLDKYDEEGGFTEALATEF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
VKEALETFRWHQSATVDEETYQALLHEHRLIADVVCFPGCHINHLTPRTLDIDRVQSMMP
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
EYGIEPKVLIEGPPRREVPILLRQTSFKALEEPVLFAGEKQGTHTARFGEIEQRGVALTP
HHCCCCEEEECCCCCCCCCCEEEHHHHHHHHCCHHCCCCCCCCCCHHCCCHHHCCEEECC
KGRQLYDTLLQKAGTGKDNLTHQLHLQDVFKAFPDSEFLLRQQGLAWFRYRLTPTGEAHR
CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCEEEEEEECCCCHHHH
QAIHPGDDPQPLIERGWLVAQPVTYEDFLPVSAAGIFQSNLGNETQVRSHGNASRQAFEQ
HCCCCCCCCCHHHHCCCEEECCCCHHHCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHH
ALGCPVYDEFVLYQRTEERSKRRCGLL
HHCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]