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The map label for this gene is pcaH [H]

Identifier: 218548857

GI number: 218548857

Start: 1536886

End: 1537644

Strand: Reverse

Name: pcaH [H]

Synonym: EFER_1502

Alternate gene names: 218548857

Gene position: 1537644-1536886 (Counterclockwise)

Preceding gene: 218548862

Following gene: 218548856

Centisome position: 33.51

GC content: 48.62

Gene sequence:

>759_bases
TTGATCCCGGAGCCTGCTATGAGTGAAAAATGGACGCCACGCGAAGTGATTCATCGCGATTACAACAGTCATCCCCCAGC
CTTTGCCCCAGGTTATAAAACCAGCGTGTTACGTTCACCACGCAATGCCTTAATTTCTTTACAAAACTCTTTATCAGAAA
TTACCGGCCCGGTATTCAGTAATAACGATTTAGGACCGCAGGATAATGACCTGATCATGAATTACGCCAAAGAAGGATTA
CCCATTGGCGAGCGAATTATTGTTCACGGTTATGTTCGCGACGGTTTTGGTCGGCCGATGAAAAATACGCTGGTGGAAAT
ATGGCAAGCCAATGCCGGTGGTCGTTATCGCCACAAGAAAGATCAGTATCTTGCGCCTATCGACCCAAATTTCGGCGGAT
GCGGGCGTGTGTTAACTGACGAAAATGGCTACTACTTCTTTCGCACCATCAAGCCAGGCCCTTATCCATGGCGTAATCAG
GCCAGCGACTGGCGGCCTTCACATATCCATTTTTCTCTCTCTGGTGAAGCCTTCGCTCAGCGCCTGATTACTCAAATGTA
TTTTGAAGGCGACCCGCTGATTAAACAGTGCCCTATTGTGCAGGCGATCAAAAATGAAGATGCGATTCGTACGCTTATTG
CCGAACTGGACACGCACACCGCGATTCCTCTCGACAGCCTGGCATATCGCTTTGATTTGGTATTACGTGGTCAACGTGCC
ACGCTGTTCGAAAACCGCACTCAGGGAGTGGCAAAATGA

Upstream 100 bases:

>100_bases
GTATAACCATTGGTTATGTTAATGGATATGTAAATTCACTTTAAATTAACAATATATTTACACACACTCATTCCGCAGTA
TCAAAACAATAAACTTACCT

Downstream 100 bases:

>100_bases
AGAATTATTTAGCGGAAACAGCTTCGCAAACTGCCGGGCCATATGTGCACATTGGCCTCGCCCCTGATGCCGCTGGTTTT
CATATTTTTGAGAAGAATTT

Product: protocatechuate 3,4-dioxygenase beta chain

Products: NA

Alternate protein names: 3,4-PCD [H]

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MIPEPAMSEKWTPREVIHRDYNSHPPAFAPGYKTSVLRSPRNALISLQNSLSEITGPVFSNNDLGPQDNDLIMNYAKEGL
PIGERIIVHGYVRDGFGRPMKNTLVEIWQANAGGRYRHKKDQYLAPIDPNFGGCGRVLTDENGYYFFRTIKPGPYPWRNQ
ASDWRPSHIHFSLSGEAFAQRLITQMYFEGDPLIKQCPIVQAIKNEDAIRTLIAELDTHTAIPLDSLAYRFDLVLRGQRA
TLFENRTQGVAK

Sequences:

>Translated_252_residues
MIPEPAMSEKWTPREVIHRDYNSHPPAFAPGYKTSVLRSPRNALISLQNSLSEITGPVFSNNDLGPQDNDLIMNYAKEGL
PIGERIIVHGYVRDGFGRPMKNTLVEIWQANAGGRYRHKKDQYLAPIDPNFGGCGRVLTDENGYYFFRTIKPGPYPWRNQ
ASDWRPSHIHFSLSGEAFAQRLITQMYFEGDPLIKQCPIVQAIKNEDAIRTLIAELDTHTAIPLDSLAYRFDLVLRGQRA
TLFENRTQGVAK
>Mature_252_residues
MIPEPAMSEKWTPREVIHRDYNSHPPAFAPGYKTSVLRSPRNALISLQNSLSEITGPVFSNNDLGPQDNDLIMNYAKEGL
PIGERIIVHGYVRDGFGRPMKNTLVEIWQANAGGRYRHKKDQYLAPIDPNFGGCGRVLTDENGYYFFRTIKPGPYPWRNQ
ASDWRPSHIHFSLSGEAFAQRLITQMYFEGDPLIKQCPIVQAIKNEDAIRTLIAELDTHTAIPLDSLAYRFDLVLRGQRA
TLFENRTQGVAK

Specific function: Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway [H]

COG id: COG3485

COG function: function code Q; Protocatechuate 3,4-dioxygenase beta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the intradiol ring-cleavage dioxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000627
- InterPro:   IPR015889
- InterPro:   IPR012785 [H]

Pfam domain/function: PF00775 Dioxygenase_C [H]

EC number: =1.13.11.3 [H]

Molecular weight: Translated: 28601; Mature: 28601

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS00083 INTRADIOL_DIOXYGENAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPEPAMSEKWTPREVIHRDYNSHPPAFAPGYKTSVLRSPRNALISLQNSLSEITGPVFS
CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCCCC
NNDLGPQDNDLIMNYAKEGLPIGERIIVHGYVRDGFGRPMKNTLVEIWQANAGGRYRHKK
CCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCC
DQYLAPIDPNFGGCGRVLTDENGYYFFRTIKPGPYPWRNQASDWRPSHIHFSLSGEAFAQ
CCEECCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECHHHHHH
RLITQMYFEGDPLIKQCPIVQAIKNEDAIRTLIAELDTHTAIPLDSLAYRFDLVLRGQRA
HHHHHHHCCCCCHHHHCCHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHEEEECCCH
TLFENRTQGVAK
HHHHCCCCCCCC
>Mature Secondary Structure
MIPEPAMSEKWTPREVIHRDYNSHPPAFAPGYKTSVLRSPRNALISLQNSLSEITGPVFS
CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCCCC
NNDLGPQDNDLIMNYAKEGLPIGERIIVHGYVRDGFGRPMKNTLVEIWQANAGGRYRHKK
CCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCC
DQYLAPIDPNFGGCGRVLTDENGYYFFRTIKPGPYPWRNQASDWRPSHIHFSLSGEAFAQ
CCEECCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECHHHHHH
RLITQMYFEGDPLIKQCPIVQAIKNEDAIRTLIAELDTHTAIPLDSLAYRFDLVLRGQRA
HHHHHHHCCCCCHHHHCCHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHEEEECCCH
TLFENRTQGVAK
HHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2298704; 8063101 [H]