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The map label for this gene is ompD [H]

Identifier: 218548844

GI number: 218548844

Start: 1522739

End: 1523854

Strand: Reverse

Name: ompD [H]

Synonym: EFER_1487

Alternate gene names: 218548844

Gene position: 1523854-1522739 (Counterclockwise)

Preceding gene: 218548845

Following gene: 218548835

Centisome position: 33.21

GC content: 41.85

Gene sequence:

>1116_bases
ATGAAAACAAAATTAATAGCAGTGGTGATATCAACTTTGTTAGCAGCAGGCGCCGTAAACGCAGCTGAAATCTACAACAA
AGATGGCAACAAACTGGATCTTTATGGAAAAGTGAATGGATTACATTACTTTTCAAAAGATGATAGTAAAAATGGCGATA
AAACCTATGCTCGTCTCGGTTTTAAGGGTGAAACGCAAATTACCTATGAACTGACAGGCTATGGTCAATTTGAGTATGAA
TTTAAGGCCAATGGACCTGAATCGGAAGGTTCCCACAAAGATAAAACTCGTCTTGCATTTGCTGGTTTGAAATTTGATCA
GTTCGGTTCTCTCGATTATGGTCGTAACTATGGCGTAGCCTATGACATTGGTGCATGGACAGACGCTCTGCCTGAATTCG
GTGCCGACACATGGATTCAAACCGATGTATTCATGACTAAACGAGGCACTGGACTTGCCACTTACCGTAATAATGACTTT
TTCGGTCTGGTTGAAGGCCTGAACTTCGCTGTGCAGTATCAGGGCAAAAATGACAGCAGTAATGAATATTCATCATCGGG
ACGCGTCCAAACTGAAGGCAACGGTGATGGCTTTGGTATTTCGTCCTCATATACCTATGAAGGTTTTGCTGCAGGGGCGG
CTTATACCCATTCTGACCGAACAGTTGGTCAACAAGAATTAGCAAAAATTAATTCTATTAACGCCTCCGGTAAAGCAGCT
GAAATGTGGGTTGCAGGCCTTAAATATGATGCGAATAACATCTACCTTGCTGCCACTTATGCTGAAACACTGAATATGAC
GCATTTTGGTAATTCCTGGACGGGCCCATATATTGCGAATAAAACCCAGAACATCGAACTTGTTGCTCAATATCAGTTTG
ATTTCGGCTTACGCCCGTCAGTGGCATATCTGAAATCGAAAGGAAAAGAACTGGAGCGTTGGGATAGCCAGGATCTGGTT
GAATACATTGATCTTGGCACCAGTTACTACTTCAACAAAAATATGTCCACCTATGTGGATTACAAAATCAACTTGCTTGA
TGACACAAGCTTCACGAAGCAATCGAGTATAAATACTGACAACATTGTTGCTGTCGGTCTGGTTTATCAATTCTGA

Upstream 100 bases:

>100_bases
GAACTATTGATTCGCCACTCTTTTAATATGCGCAGTTATGGAAGATTGATATTCTAATTATTGCAGACTATACCTTAGGA
ATATTACAGAGATATATACA

Downstream 100 bases:

>100_bases
TAAGTTATCCCGCCCGTAAATCAGCGCAGTGCTGGCTTACGGGCACTCCAGGTAGAATTATGCAACAGGTAACTGGATTG
TGCCTTTGTGGGCAAAGCCA

Product: outer membrane porin protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MKTKLIAVVISTLLAAGAVNAAEIYNKDGNKLDLYGKVNGLHYFSKDDSKNGDKTYARLGFKGETQITYELTGYGQFEYE
FKANGPESEGSHKDKTRLAFAGLKFDQFGSLDYGRNYGVAYDIGAWTDALPEFGADTWIQTDVFMTKRGTGLATYRNNDF
FGLVEGLNFAVQYQGKNDSSNEYSSSGRVQTEGNGDGFGISSSYTYEGFAAGAAYTHSDRTVGQQELAKINSINASGKAA
EMWVAGLKYDANNIYLAATYAETLNMTHFGNSWTGPYIANKTQNIELVAQYQFDFGLRPSVAYLKSKGKELERWDSQDLV
EYIDLGTSYYFNKNMSTYVDYKINLLDDTSFTKQSSINTDNIVAVGLVYQF

Sequences:

>Translated_371_residues
MKTKLIAVVISTLLAAGAVNAAEIYNKDGNKLDLYGKVNGLHYFSKDDSKNGDKTYARLGFKGETQITYELTGYGQFEYE
FKANGPESEGSHKDKTRLAFAGLKFDQFGSLDYGRNYGVAYDIGAWTDALPEFGADTWIQTDVFMTKRGTGLATYRNNDF
FGLVEGLNFAVQYQGKNDSSNEYSSSGRVQTEGNGDGFGISSSYTYEGFAAGAAYTHSDRTVGQQELAKINSINASGKAA
EMWVAGLKYDANNIYLAATYAETLNMTHFGNSWTGPYIANKTQNIELVAQYQFDFGLRPSVAYLKSKGKELERWDSQDLV
EYIDLGTSYYFNKNMSTYVDYKINLLDDTSFTKQSSINTDNIVAVGLVYQF
>Mature_371_residues
MKTKLIAVVISTLLAAGAVNAAEIYNKDGNKLDLYGKVNGLHYFSKDDSKNGDKTYARLGFKGETQITYELTGYGQFEYE
FKANGPESEGSHKDKTRLAFAGLKFDQFGSLDYGRNYGVAYDIGAWTDALPEFGADTWIQTDVFMTKRGTGLATYRNNDF
FGLVEGLNFAVQYQGKNDSSNEYSSSGRVQTEGNGDGFGISSSYTYEGFAAGAAYTHSDRTVGQQELAKINSINASGKAA
EMWVAGLKYDANNIYLAATYAETLNMTHFGNSWTGPYIANKTQNIELVAQYQFDFGLRPSVAYLKSKGKELERWDSQDLV
EYIDLGTSYYFNKNMSTYVDYKINLLDDTSFTKQSSINTDNIVAVGLVYQF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1788544, Length=379, Percent_Identity=60.9498680738786, Blast_Score=436, Evalue=1e-123,
Organism=Escherichia coli, GI1787641, Length=385, Percent_Identity=61.2987012987013, Blast_Score=417, Evalue=1e-118,
Organism=Escherichia coli, GI1786436, Length=373, Percent_Identity=56.8364611260054, Blast_Score=397, Evalue=1e-112,
Organism=Escherichia coli, GI1787160, Length=378, Percent_Identity=57.1428571428571, Blast_Score=386, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 41155; Mature: 41155

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS00576 GRAM_NEG_PORIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKLIAVVISTLLAAGAVNAAEIYNKDGNKLDLYGKVNGLHYFSKDDSKNGDKTYARLG
CCCHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEEC
FKGETQITYELTGYGQFEYEFKANGPESEGSHKDKTRLAFAGLKFDQFGSLDYGRNYGVA
CCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCEEEEECCCHHHCCCCCCCCCCCEE
YDIGAWTDALPEFGADTWIQTDVFMTKRGTGLATYRNNDFFGLVEGLNFAVQYQGKNDSS
EECCCHHHHHHHCCCCCEEEEEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCC
NEYSSSGRVQTEGNGDGFGISSSYTYEGFAAGAAYTHSDRTVGQQELAKINSINASGKAA
CCCCCCCEEEECCCCCCCCCCCCCCCCCEECCCEEECCCCCCCHHHHHHHHCCCCCCCEE
EMWVAGLKYDANNIYLAATYAETLNMTHFGNSWTGPYIANKTQNIELVAQYQFDFGLRPS
EEEEEEEEECCCCEEEEEEEHHHCEEEECCCCCCCCEECCCCCCEEEEEEEEECCCCCCH
VAYLKSKGKELERWDSQDLVEYIDLGTSYYFNKNMSTYVDYKINLLDDTSFTKQSSINTD
HHHHHHCCCHHHHCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCC
NIVAVGLVYQF
CEEEEEEEEEC
>Mature Secondary Structure
MKTKLIAVVISTLLAAGAVNAAEIYNKDGNKLDLYGKVNGLHYFSKDDSKNGDKTYARLG
CCCHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEEC
FKGETQITYELTGYGQFEYEFKANGPESEGSHKDKTRLAFAGLKFDQFGSLDYGRNYGVA
CCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCEEEEECCCHHHCCCCCCCCCCCEE
YDIGAWTDALPEFGADTWIQTDVFMTKRGTGLATYRNNDFFGLVEGLNFAVQYQGKNDSS
EECCCHHHHHHHCCCCCEEEEEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCC
NEYSSSGRVQTEGNGDGFGISSSYTYEGFAAGAAYTHSDRTVGQQELAKINSINASGKAA
CCCCCCCEEEECCCCCCCCCCCCCCCCCEECCCEEECCCCCCCHHHHHHHHCCCCCCCEE
EMWVAGLKYDANNIYLAATYAETLNMTHFGNSWTGPYIANKTQNIELVAQYQFDFGLRPS
EEEEEEEEECCCCEEEEEEEHHHCEEEECCCCCCCCEECCCCCCEEEEEEEEECCCCCCH
VAYLKSKGKELERWDSQDLVEYIDLGTSYYFNKNMSTYVDYKINLLDDTSFTKQSSINTD
HHHHHHCCCHHHHCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCC
NIVAVGLVYQF
CEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA