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The map label for this gene is yncD [H]

Identifier: 218548815

GI number: 218548815

Start: 1494796

End: 1496898

Strand: Reverse

Name: yncD [H]

Synonym: EFER_1454

Alternate gene names: 218548815

Gene position: 1496898-1494796 (Counterclockwise)

Preceding gene: 218548817

Following gene: 218548812

Centisome position: 32.62

GC content: 51.26

Gene sequence:

>2103_bases
ATGAAGATTTTTTCCGTCCGACAGACCGTTTTGCCCGCACTGCTTGTCCTTTCCCCCGTTGTTTTTGCCGCTGATGAACA
GACTATGATTGTCAGTGCCGCACCGCAGGTGGTTTCAGAACTGGATACCCCAGCAGCAGTAAGCGTGGTGGATGGCGAGG
AGATGCGCCTGGCAACACCGCGCATTAACTTGTCCGAATCACTGACCGGCGTGCCTGGTTTGCAGGTACAAAACCGGCAG
AACTATGCGCAAGATTTACAGCTGTCGATTCGCGGATTTGGCTCCCGCTCCACTTACGGTATTCGCGGTATTCGCCTGTA
TGTGGACGGTATTCCCGCCACCATGCCCGACGGGCAAGGGCAAACATCCAACATCGATTTAAGCAGTGTGCAAAATGTGG
AAGTGCTGCGTGGCCCCTTCTCTGCCCTGTATGGCAACGCGTCTGGCGGTGTAATGAATGTCACCACCCAGACCGGACAA
CAGCCACCAACCATTGAAGCCAGTAGTTACTACGGCAGTTTTGGCAGCTGGCGCTATGGGCTGAAAGCAACGGGCGCAAC
GGGAGACGGCACACAGCCCGGTGATGTCGATTACACCGTCTCAACCACGCGTTTTACGACCCACGGCTATCGTGATCATA
GTGGCGCACAGAAAAATTTAGCCAATGCCAAACTGGGCGTTCGCATTGATGACGCCAGCAAATTAAGCCTGATTTTCAAT
AGTGTGGATATCAAAGCAGATGACCCAGGTGGATTAACCGAAGCAGAATGGAAGGCGAATCCGCAACAAGCGCCACGCGC
TGAACAGTACGACACGCGAAAAACCATCAAGCAAACTCAGGCTGGGTTGCGTTATGAGCGTAGCCTGAGCGCGAAAGATG
ATATGAGTGTGATGATGTATGCCGGAGAACGAGAAACGACCCAGTACCAGTCAATCCCAATGGCCCCGCAACTTAACCCA
TCGCATGCGGGCGGTGTGATTACTCTACAACGCCATTATCAGGGGATAGACAGCCGCTGGACACACCGTGGCGAACTGGG
TGTTCCGGTCACGTTCACTACCGGCCTGAACTACGAAAACATGAGTGAAAACCGTAAAGGCTACAACAACTTCCGCCTGA
ACAGCGGTGTGCCGGAGTACGGGCAAAAAGGTGAGTTGCGCCGCGACGAACGCAATCTGATGTGGAACGTCGATCCTTAT
TTACAAACGCAGTGGCAGCTGAGCGAAAAACTGTCGCTGGATGCTGGCGTGCGCTACAGCTCCGTATGGTTTGATTCCAA
CGATCATTACATTACTCCGGGTAACGGCGATGACAGTGGTGATGCCAGTTATCACAAATGGCTACCAGCCGGATCGTTAA
AATATGCAATGACCGATGCCTGGAATATCTATCTGGCAGCCGGGCGTGGTTTTGAAACGCCGACGATTAATGAGCTGTCT
TATCGTGCTGACGGTCAAAGCGGTATGAACTTTGGTTTAAAACCATCCACCAACGATACAATTGAGATCGGCAGTAAAAC
GCGTATTGGTGATGGGCTGCTTAGTCTCGCATTGTTCCAGACCGACACCGATGATGAAATTGTTGTCGATAGCAGTAGCG
GTGGACGTACGACTTATAAAAATGCCGGAAAGACCCGTCGTCAAGGTGCTGAGCTGGCATGGGATCAACGTTTCGCGGGA
GATTTTCGCATAAAAGCGTCCTGGACCTGGCTTGATGCGACCTATCGCAGCAATGTTTGCAATGATCAAGATTGTAACGG
TAACCGGATGCCGGGGATCGCCCGTAATATGGGCTTTGCGTCGATAGGTTATGTACCGGAAGATGGCTGGTATGCAGGCA
CGGAAGCGCGTTATATGGGCGATATTATGGCCGATGATGAAAATACGGCCAAAGCGCCTTCTTATACACTCGTCGGCTTA
TTCACGGGGTATAAATACAATTACCACAATTTAACTGTGGATTTATTTGGTCGCATCGATAATTTATTCGATAAAGAATA
CGTTGGTTCTGTCATTGTCAATGAGTCGAACGGGCGATATTACGAACCTGCGCCCGGGCGAAATTATGGTATCGGCGTGA
ATGTTGCGTGGCGATTTGAGTGA

Upstream 100 bases:

>100_bases
ATTTTCTCAATTACTTAACGTATTGTGCCGTTTCATTTTCCATAAATTTACAATTTCATTACCATGACGGCGTTTTCCCA
TTCTTAACCTGGCTTTTTTC

Downstream 100 bases:

>100_bases
TTATCTTGATGCCCGGTATTTGCCGGGCATTTAATTTAACGATTATATTGCTGGTATAACATAGCAACGTTTTGTTGCAT
AATTTCAGCAAGACAATGTT

Product: iron outer membrane receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 700; Mature: 700

Protein sequence:

>700_residues
MKIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQVVSELDTPAAVSVVDGEEMRLATPRINLSESLTGVPGLQVQNRQ
NYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPATMPDGQGQTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQ
QPPTIEASSYYGSFGSWRYGLKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDDASKLSLIFN
SVDIKADDPGGLTEAEWKANPQQAPRAEQYDTRKTIKQTQAGLRYERSLSAKDDMSVMMYAGERETTQYQSIPMAPQLNP
SHAGGVITLQRHYQGIDSRWTHRGELGVPVTFTTGLNYENMSENRKGYNNFRLNSGVPEYGQKGELRRDERNLMWNVDPY
LQTQWQLSEKLSLDAGVRYSSVWFDSNDHYITPGNGDDSGDASYHKWLPAGSLKYAMTDAWNIYLAAGRGFETPTINELS
YRADGQSGMNFGLKPSTNDTIEIGSKTRIGDGLLSLALFQTDTDDEIVVDSSSGGRTTYKNAGKTRRQGAELAWDQRFAG
DFRIKASWTWLDATYRSNVCNDQDCNGNRMPGIARNMGFASIGYVPEDGWYAGTEARYMGDIMADDENTAKAPSYTLVGL
FTGYKYNYHNLTVDLFGRIDNLFDKEYVGSVIVNESNGRYYEPAPGRNYGIGVNVAWRFE

Sequences:

>Translated_700_residues
MKIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQVVSELDTPAAVSVVDGEEMRLATPRINLSESLTGVPGLQVQNRQ
NYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPATMPDGQGQTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQ
QPPTIEASSYYGSFGSWRYGLKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDDASKLSLIFN
SVDIKADDPGGLTEAEWKANPQQAPRAEQYDTRKTIKQTQAGLRYERSLSAKDDMSVMMYAGERETTQYQSIPMAPQLNP
SHAGGVITLQRHYQGIDSRWTHRGELGVPVTFTTGLNYENMSENRKGYNNFRLNSGVPEYGQKGELRRDERNLMWNVDPY
LQTQWQLSEKLSLDAGVRYSSVWFDSNDHYITPGNGDDSGDASYHKWLPAGSLKYAMTDAWNIYLAAGRGFETPTINELS
YRADGQSGMNFGLKPSTNDTIEIGSKTRIGDGLLSLALFQTDTDDEIVVDSSSGGRTTYKNAGKTRRQGAELAWDQRFAG
DFRIKASWTWLDATYRSNVCNDQDCNGNRMPGIARNMGFASIGYVPEDGWYAGTEARYMGDIMADDENTAKAPSYTLVGL
FTGYKYNYHNLTVDLFGRIDNLFDKEYVGSVIVNESNGRYYEPAPGRNYGIGVNVAWRFE
>Mature_700_residues
MKIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQVVSELDTPAAVSVVDGEEMRLATPRINLSESLTGVPGLQVQNRQ
NYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPATMPDGQGQTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQ
QPPTIEASSYYGSFGSWRYGLKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDDASKLSLIFN
SVDIKADDPGGLTEAEWKANPQQAPRAEQYDTRKTIKQTQAGLRYERSLSAKDDMSVMMYAGERETTQYQSIPMAPQLNP
SHAGGVITLQRHYQGIDSRWTHRGELGVPVTFTTGLNYENMSENRKGYNNFRLNSGVPEYGQKGELRRDERNLMWNVDPY
LQTQWQLSEKLSLDAGVRYSSVWFDSNDHYITPGNGDDSGDASYHKWLPAGSLKYAMTDAWNIYLAAGRGFETPTINELS
YRADGQSGMNFGLKPSTNDTIEIGSKTRIGDGLLSLALFQTDTDDEIVVDSSSGGRTTYKNAGKTRRQGAELAWDQRFAG
DFRIKASWTWLDATYRSNVCNDQDCNGNRMPGIARNMGFASIGYVPEDGWYAGTEARYMGDIMADDENTAKAPSYTLVGL
FTGYKYNYHNLTVDLFGRIDNLFDKEYVGSVIVNESNGRYYEPAPGRNYGIGVNVAWRFE

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=700, Percent_Identity=97.7142857142857, Blast_Score=1426, Evalue=0.0,
Organism=Escherichia coli, GI1790743, Length=644, Percent_Identity=24.223602484472, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1788478, Length=155, Percent_Identity=32.9032258064516, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1787024, Length=268, Percent_Identity=27.2388059701493, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 77186; Mature: 77186

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQVVSELDTPAAVSVVDGEEMRLATP
CCCHHHHHHHHHHHHHHCCCEEECCCCEEEEECCHHHHHHCCCCCEEEEECCCCEEEECC
RINLSESLTGVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPATMPDGQG
CCCCHHCCCCCCCCEECCCCCHHHHEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCC
QTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQQPPTIEASSYYGSFGSWRYG
CCCCEEHHHCCCCHHHHCCHHHHCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCEEEC
LKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDDASKLSLIFN
EEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCHHHHCCCEEEEEECCCCEEEEEEE
SVDIKADDPGGLTEAEWKANPQQAPRAEQYDTRKTIKQTQAGLRYERSLSAKDDMSVMMY
EEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEHHCCCCCCCCEEEEE
AGERETTQYQSIPMAPQLNPSHAGGVITLQRHYQGIDSRWTHRGELGVPVTFTTGLNYEN
ECCCCCCHHHCCCCCCCCCCCCCCCEEEEHHHHCCCCCCCCCCCCCCCCEEEECCCCCCC
MSENRKGYNNFRLNSGVPEYGQKGELRRDERNLMWNVDPYLQTQWQLSEKLSLDAGVRYS
CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCHHHCCHHHHHHHCCCCCCCEEE
SVWFDSNDHYITPGNGDDSGDASYHKWLPAGSLKYAMTDAWNIYLAAGRGFETPTINELS
EEEECCCCCEECCCCCCCCCCCCHHHCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCEE
YRADGQSGMNFGLKPSTNDTIEIGSKTRIGDGLLSLALFQTDTDDEIVVDSSSGGRTTYK
EECCCCCCCCCCCCCCCCCEEEECCCCCCCCHHEEEEEEECCCCCEEEEECCCCCCCCCC
NAGKTRRQGAELAWDQRFAGDFRIKASWTWLDATYRSNVCNDQDCNGNRMPGIARNMGFA
CCCCHHHCCCCCEECCCCCCCEEEEEEEEEEEEHHHCCCCCCCCCCCCCCCCHHHCCCCE
SIGYVPEDGWYAGTEARYMGDIMADDENTAKAPSYTLVGLFTGYKYNYHNLTVDLFGRID
EECCCCCCCEECCCCCCEECCEEECCCCCCCCCCEEEEEEEECCEEEEEEEEEEEHHHHH
NLFDKEYVGSVIVNESNGRYYEPAPGRNYGIGVNVAWRFE
HHHHHHHCCEEEEECCCCCEECCCCCCCCEEEEEEEEEEC
>Mature Secondary Structure
MKIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQVVSELDTPAAVSVVDGEEMRLATP
CCCHHHHHHHHHHHHHHCCCEEECCCCEEEEECCHHHHHHCCCCCEEEEECCCCEEEECC
RINLSESLTGVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGIRGIRLYVDGIPATMPDGQG
CCCCHHCCCCCCCCEECCCCCHHHHEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCC
QTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQQPPTIEASSYYGSFGSWRYG
CCCCEEHHHCCCCHHHHCCHHHHCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCEEEC
LKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQKNLANAKLGVRIDDASKLSLIFN
EEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCHHHHCCCEEEEEECCCCEEEEEEE
SVDIKADDPGGLTEAEWKANPQQAPRAEQYDTRKTIKQTQAGLRYERSLSAKDDMSVMMY
EEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEHHCCCCCCCCEEEEE
AGERETTQYQSIPMAPQLNPSHAGGVITLQRHYQGIDSRWTHRGELGVPVTFTTGLNYEN
ECCCCCCHHHCCCCCCCCCCCCCCCEEEEHHHHCCCCCCCCCCCCCCCCEEEECCCCCCC
MSENRKGYNNFRLNSGVPEYGQKGELRRDERNLMWNVDPYLQTQWQLSEKLSLDAGVRYS
CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCHHHCCHHHHHHHCCCCCCCEEE
SVWFDSNDHYITPGNGDDSGDASYHKWLPAGSLKYAMTDAWNIYLAAGRGFETPTINELS
EEEECCCCCEECCCCCCCCCCCCHHHCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCEE
YRADGQSGMNFGLKPSTNDTIEIGSKTRIGDGLLSLALFQTDTDDEIVVDSSSGGRTTYK
EECCCCCCCCCCCCCCCCCEEEECCCCCCCCHHEEEEEEECCCCCEEEEECCCCCCCCCC
NAGKTRRQGAELAWDQRFAGDFRIKASWTWLDATYRSNVCNDQDCNGNRMPGIARNMGFA
CCCCHHHCCCCCEECCCCCCCEEEEEEEEEEEEHHHCCCCCCCCCCCCCCCCHHHCCCCE
SIGYVPEDGWYAGTEARYMGDIMADDENTAKAPSYTLVGLFTGYKYNYHNLTVDLFGRID
EECCCCCCCEECCCCCCEECCEEECCCCCCCCCCEEEEEEEECCEEEEEEEEEEEHHHHH
NLFDKEYVGSVIVNESNGRYYEPAPGRNYGIGVNVAWRFE
HHHHHHHCCEEEEECCCCCEECCCCCCCCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]