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The map label for this gene is ydgA [H]

Identifier: 218548784

GI number: 218548784

Start: 1461222

End: 1462799

Strand: Reverse

Name: ydgA [H]

Synonym: EFER_1423

Alternate gene names: 218548784

Gene position: 1462799-1461222 (Counterclockwise)

Preceding gene: 218548785

Following gene: 218548783

Centisome position: 31.88

GC content: 47.53

Gene sequence:

>1578_bases
TTGCTAAGCTTATTAAAGGCTTATAACACCACCAGGCGGTATGTTCCGCCTGGTTTCATTTTACGGATAAAAAATATGAA
AAAATCGCTGGTAGCGGCAGGCGTTGTTGTAGCACTTGGTCTTATCTGGACAGGTGGTGCATGGTACACGGGGAAAAAAC
TGGAAACGCATCTGGCGGAGATGGTTAGCCAGGCCAATGCGCAACTCAAGCTCACCGCTCCTGAGGCTAACGTGGAGGTG
AGTTATCAAAATTATCAGCGTGGCATTTTCAGTAGCCAGTTACAGTTGGTAGTGAAACCTGAGGCAGGTAAGGTGAGTCC
GTGGATTAAAACTGGTCACAGCATCATCCTCGACGAATCTGTTGATCATGGCCCCTTTCCGCTCTCCCAGTTAAAATCGC
TCAATCTTATCCCGGCGATGGCATCGGTCAGAACCACTCTGGTCAATAATGAAGTAACTCAACCACTGTTTGAACTCTCT
AAAGGCGAAATGCCTTTCGTCGTCAATTCACGTATTAGTTATAGCGGCGATAGCCGTTCAGATATTCATCTGAACTCACT
AAATTATGAAAAAGAAGGTGAAAAAGTTGCCTTTAGTGGCGGTGAGTTTCAGGTTAATGCAGACCGGGACGGTAAAGTTA
TTTCCCTTTCCGGGGAAGCACAAAGCGGCCTGATTGATGCAGTGAATGAATACGACCAAAAAGTTCAGATCACCTTTAAC
AACCTGAAAACCGAGGGTTCCAGTACACTTGCGGATTTCGGCGAACGAGTGGGTAATCAGCAACTTTCTGTAGACAAAGT
AGCCATTTCAGTCGCAGGCAAGGAACTGGCACTACTGGAAGGGATGGAGATTGCGGGTAAATCTGATTTGGTGAACGACG
GCAAAACGATCAATAGCCAACTGGACTACTCACTTAAGAGCCTGAAAATGCAGAATCAGGATCTGGGCAGCGGTAAGCTG
ACTCTTAAAGTGGGTCAGATTGATGGCGCGGCCCTGCACCAGTTTACCCGGCAGTACAATGCCCAGACTCAGGCACTGAT
GGCACAACCAGAAATCAGCAATAATCCGGAACTCTATCAGCAAAAAGTGACCGAAGCATTTTTTGCTGCTCTGCCGCTGC
TGATGAAAGGTGATCCGGTTATTACGATTGCACCACTGAGCTGGAAGAACAGCAAAGGTGAAAGCGCGTTTAATCTGTCG
TTGTTCCTCAAAGATCCCACCACCACTACCGAACAGCCTCAAACGTTGGCTCAGGAAGTGGATCGCTCTGTAAAATCTCT
GGATGCAAAACTGACCATCCCTGTGGATATGGCAACGGAGTTGATGACTCAGGTGGCAAAACTTGAAGGCTATCAGCAAG
ATAAGGCTGAAAAATTAGCTCAACAGCAGGTTAATGGATTTTCAGCTGCCGGGCAGATGTTCCGCCTGACGACGTTGAAT
GACAATACCATCACCACCAGCCTGCAATATGCCAATGGTCAAATTACGCTTAATGGCCAAAAAATGCCGCTGGAAGCGTT
CGTTGGCATGTTTGCCATGCCTGCATTATCAGTGCCCGCAGTTCCCGCTCTCCCATAA

Upstream 100 bases:

>100_bases
TTATAGCCGCAAACGAGTCGCCGGTTTTAGTGAGTGGCAATGGTCGTTTAGCCCGCGTTTACAACAAGCTGTAATGGCAT
ACTGAAATATTTAACAACTC

Downstream 100 bases:

>100_bases
AGGTAACAGCGCCGGAGAATTTCACTCCGGCGTTCTATCGAATCCCCGCTTTCTCCCGGTAATCAAACAAACGCTGACAA
TATTCTGACTGCCCTGGTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 525; Mature: 525

Protein sequence:

>525_residues
MLSLLKAYNTTRRYVPPGFILRIKNMKKSLVAAGVVVALGLIWTGGAWYTGKKLETHLAEMVSQANAQLKLTAPEANVEV
SYQNYQRGIFSSQLQLVVKPEAGKVSPWIKTGHSIILDESVDHGPFPLSQLKSLNLIPAMASVRTTLVNNEVTQPLFELS
KGEMPFVVNSRISYSGDSRSDIHLNSLNYEKEGEKVAFSGGEFQVNADRDGKVISLSGEAQSGLIDAVNEYDQKVQITFN
NLKTEGSSTLADFGERVGNQQLSVDKVAISVAGKELALLEGMEIAGKSDLVNDGKTINSQLDYSLKSLKMQNQDLGSGKL
TLKVGQIDGAALHQFTRQYNAQTQALMAQPEISNNPELYQQKVTEAFFAALPLLMKGDPVITIAPLSWKNSKGESAFNLS
LFLKDPTTTTEQPQTLAQEVDRSVKSLDAKLTIPVDMATELMTQVAKLEGYQQDKAEKLAQQQVNGFSAAGQMFRLTTLN
DNTITTSLQYANGQITLNGQKMPLEAFVGMFAMPALSVPAVPALP

Sequences:

>Translated_525_residues
MLSLLKAYNTTRRYVPPGFILRIKNMKKSLVAAGVVVALGLIWTGGAWYTGKKLETHLAEMVSQANAQLKLTAPEANVEV
SYQNYQRGIFSSQLQLVVKPEAGKVSPWIKTGHSIILDESVDHGPFPLSQLKSLNLIPAMASVRTTLVNNEVTQPLFELS
KGEMPFVVNSRISYSGDSRSDIHLNSLNYEKEGEKVAFSGGEFQVNADRDGKVISLSGEAQSGLIDAVNEYDQKVQITFN
NLKTEGSSTLADFGERVGNQQLSVDKVAISVAGKELALLEGMEIAGKSDLVNDGKTINSQLDYSLKSLKMQNQDLGSGKL
TLKVGQIDGAALHQFTRQYNAQTQALMAQPEISNNPELYQQKVTEAFFAALPLLMKGDPVITIAPLSWKNSKGESAFNLS
LFLKDPTTTTEQPQTLAQEVDRSVKSLDAKLTIPVDMATELMTQVAKLEGYQQDKAEKLAQQQVNGFSAAGQMFRLTTLN
DNTITTSLQYANGQITLNGQKMPLEAFVGMFAMPALSVPAVPALP
>Mature_525_residues
MLSLLKAYNTTRRYVPPGFILRIKNMKKSLVAAGVVVALGLIWTGGAWYTGKKLETHLAEMVSQANAQLKLTAPEANVEV
SYQNYQRGIFSSQLQLVVKPEAGKVSPWIKTGHSIILDESVDHGPFPLSQLKSLNLIPAMASVRTTLVNNEVTQPLFELS
KGEMPFVVNSRISYSGDSRSDIHLNSLNYEKEGEKVAFSGGEFQVNADRDGKVISLSGEAQSGLIDAVNEYDQKVQITFN
NLKTEGSSTLADFGERVGNQQLSVDKVAISVAGKELALLEGMEIAGKSDLVNDGKTINSQLDYSLKSLKMQNQDLGSGKL
TLKVGQIDGAALHQFTRQYNAQTQALMAQPEISNNPELYQQKVTEAFFAALPLLMKGDPVITIAPLSWKNSKGESAFNLS
LFLKDPTTTTEQPQTLAQEVDRSVKSLDAKLTIPVDMATELMTQVAKLEGYQQDKAEKLAQQQVNGFSAAGQMFRLTTLN
DNTITTSLQYANGQITLNGQKMPLEAFVGMFAMPALSVPAVPALP

Specific function: Unknown

COG id: COG5339

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Periplasmic side. Note=Has been isolated in association with the inner membrane, suggesting it may be tethered to the membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yihF and H.influenzae HI_1236 [H]

Homologues:

Organism=Escherichia coli, GI1787900, Length=500, Percent_Identity=82.6, Blast_Score=863, Evalue=0.0,
Organism=Escherichia coli, GI87082339, Length=479, Percent_Identity=32.776617954071, Blast_Score=254, Evalue=7e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010352 [H]

Pfam domain/function: PF06097 DUF945 [H]

EC number: NA

Molecular weight: Translated: 57140; Mature: 57140

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLLKAYNTTRRYVPPGFILRIKNMKKSLVAAGVVVALGLIWTGGAWYTGKKLETHLAE
CCCHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHH
MVSQANAQLKLTAPEANVEVSYQNYQRGIFSSQLQLVVKPEAGKVSPWIKTGHSIILDES
HHHHCCCEEEEECCCCCEEEEHHHHHCCCCCCCEEEEECCCCCCCCHHHHCCCEEEEECC
VDHGPFPLSQLKSLNLIPAMASVRTTLVNNEVTQPLFELSKGEMPFVVNSRISYSGDSRS
CCCCCCCHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEECEEEECCCCCC
DIHLNSLNYEKEGEKVAFSGGEFQVNADRDGKVISLSGEAQSGLIDAVNEYDQKVQITFN
CEEEECCCCCCCCCEEEECCCEEEEECCCCCCEEEECCCCCCCHHHHHHHCCCEEEEEEE
NLKTEGSSTLADFGERVGNQQLSVDKVAISVAGKELALLEGMEIAGKSDLVNDGKTINSQ
CCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCHH
LDYSLKSLKMQNQDLGSGKLTLKVGQIDGAALHQFTRQYNAQTQALMAQPEISNNPELYQ
HHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCHHHHEEECCCCCCCHHHHH
QKVTEAFFAALPLLMKGDPVITIAPLSWKNSKGESAFNLSLFLKDPTTTTEQPQTLAQEV
HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHH
DRSVKSLDAKLTIPVDMATELMTQVAKLEGYQQDKAEKLAQQQVNGFSAAGQMFRLTTLN
HHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHCCCEEEEEEEC
DNTITTSLQYANGQITLNGQKMPLEAFVGMFAMPALSVPAVPALP
CCEEEEEEEECCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLSLLKAYNTTRRYVPPGFILRIKNMKKSLVAAGVVVALGLIWTGGAWYTGKKLETHLAE
CCCHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHH
MVSQANAQLKLTAPEANVEVSYQNYQRGIFSSQLQLVVKPEAGKVSPWIKTGHSIILDES
HHHHCCCEEEEECCCCCEEEEHHHHHCCCCCCCEEEEECCCCCCCCHHHHCCCEEEEECC
VDHGPFPLSQLKSLNLIPAMASVRTTLVNNEVTQPLFELSKGEMPFVVNSRISYSGDSRS
CCCCCCCHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEECEEEECCCCCC
DIHLNSLNYEKEGEKVAFSGGEFQVNADRDGKVISLSGEAQSGLIDAVNEYDQKVQITFN
CEEEECCCCCCCCCEEEECCCEEEEECCCCCCEEEECCCCCCCHHHHHHHCCCEEEEEEE
NLKTEGSSTLADFGERVGNQQLSVDKVAISVAGKELALLEGMEIAGKSDLVNDGKTINSQ
CCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCHH
LDYSLKSLKMQNQDLGSGKLTLKVGQIDGAALHQFTRQYNAQTQALMAQPEISNNPELYQ
HHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCHHHHEEECCCCCCCHHHHH
QKVTEAFFAALPLLMKGDPVITIAPLSWKNSKGESAFNLSLFLKDPTTTTEQPQTLAQEV
HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHH
DRSVKSLDAKLTIPVDMATELMTQVAKLEGYQQDKAEKLAQQQVNGFSAAGQMFRLTTLN
HHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHCCCEEEEEEEC
DNTITTSLQYANGQITLNGQKMPLEAFVGMFAMPALSVPAVPALP
CCEEEEEEEECCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]