Click here to switch to the map view.

The map label for this gene is ydgJ [H]

Identifier: 218548780

GI number: 218548780

Start: 1457588

End: 1458628

Strand: Direct

Name: ydgJ [H]

Synonym: EFER_1419

Alternate gene names: 218548780

Gene position: 1457588-1458628 (Clockwise)

Preceding gene: 218548768

Following gene: 218548786

Centisome position: 31.76

GC content: 50.91

Gene sequence:

>1041_bases
ATGAGCGACAGAATCAGGGTAGGATTAATCGGTTATGGCTATGCCAGTAAAACGTTCCATGCCCCTTTGATTGCAGGTAC
TCCAGGTCTGGAACTGGCAGCGGTATCAAGTAGTGATGAAGCAAAAGTTAAGGTGGACTGGCCGACAGTTACTGTTGTTT
CAGAACCGAAACATCTGTTTAACGATCCTCATCTTGATTTAATTGTAATCCCGACGCCAAACGATACCCATTTCCCTCTG
GCGAAAGCTGCGCTGGAAGCGGGTAAACACGTGATTGTTGATAAGCCATTCACCGTGACACTGTCACAAGCTCGCGAGCT
GGATTCCCTGGCGCGCAGCCTTGGAAGGGTACTTTCGGTCTTTCATAACCGTCGATGGGATAGTGATTTCCTGACGTTGA
AAGCGTTATTGGCCGAAGGCACACTGGGTGAAGTGGCTTATTTTGAATCTCACTTTGACCGTTTCCGCCCGCAAGTTCGT
GATCGCTGGCGTGAGCAAGGCGGTCCGGGGAGCGGTATCTGGTACGATTTAGGGCCACATTTACTGGATCAGGCAATTAA
TCTGTTTGGTCTGCCTGTCAGTCTGACGGTTGACCTTGCGCAACTGCGCCCTGGTGCGCAATCCACCGATTATTTTCATG
CCATTTTGTCGTATCCACAGCGGCGAGTGATTCTCCACGGCACTATGCTGGCAGCGGCAGAATCCGCCCGTTATATCGTT
CACGGTTCCCGTGGTAGTTATGTGAAATATGGACTTGACCCTCAGGAAGAGAGATTGAAAAACGGCGAACGACTGCCACA
GGAAGACTGGGGCTATGATATGCGTGACGGTGTGCTGACACGCGTCGAAGGTGATGCACGGGTAGAAGAGACGTTGCTGA
CAATCCCCGGCAATTATCCGGCGTATTATGCTGCTATTCGTGATGCGCTAAAAGGTGAAGGGGAAAATCCAGTACCGGCC
AGTCAGGCGATCCAAATTATGGAGTTGATCGAGCTGGGCATTGAATCAGCGAAGCATCGGGCGACACTTTCTCTGGCATA
A

Upstream 100 bases:

>100_bases
CTTAAGTTAAACCTTATTCACTGGTGACACCGCGAGTAATCTGTTGTGGCAGTTGGTGAGATGGTGTAAATAACTACGTT
TCGCACAAAGAGGTCAGAAG

Downstream 100 bases:

>100_bases
TCTTAAACGAACAGACCGGCAACAAAGCCGGTCTGTAACATGTGGTTATTGTCCTGCAGCGACTTTCGCACGCAGGGCTT
TTTTCTCTGCATCGCTCAGG

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MSDRIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDEAKVKVDWPTVTVVSEPKHLFNDPHLDLIVIPTPNDTHFPL
AKAALEAGKHVIVDKPFTVTLSQARELDSLARSLGRVLSVFHNRRWDSDFLTLKALLAEGTLGEVAYFESHFDRFRPQVR
DRWREQGGPGSGIWYDLGPHLLDQAINLFGLPVSLTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIV
HGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRDGVLTRVEGDARVEETLLTIPGNYPAYYAAIRDALKGEGENPVPA
SQAIQIMELIELGIESAKHRATLSLA

Sequences:

>Translated_346_residues
MSDRIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDEAKVKVDWPTVTVVSEPKHLFNDPHLDLIVIPTPNDTHFPL
AKAALEAGKHVIVDKPFTVTLSQARELDSLARSLGRVLSVFHNRRWDSDFLTLKALLAEGTLGEVAYFESHFDRFRPQVR
DRWREQGGPGSGIWYDLGPHLLDQAINLFGLPVSLTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIV
HGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRDGVLTRVEGDARVEETLLTIPGNYPAYYAAIRDALKGEGENPVPA
SQAIQIMELIELGIESAKHRATLSLA
>Mature_345_residues
SDRIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDEAKVKVDWPTVTVVSEPKHLFNDPHLDLIVIPTPNDTHFPLA
KAALEAGKHVIVDKPFTVTLSQARELDSLARSLGRVLSVFHNRRWDSDFLTLKALLAEGTLGEVAYFESHFDRFRPQVRD
RWREQGGPGSGIWYDLGPHLLDQAINLFGLPVSLTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIVH
GSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRDGVLTRVEGDARVEETLLTIPGNYPAYYAAIRDALKGEGENPVPAS
QAIQIMELIELGIESAKHRATLSLA

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=346, Percent_Identity=93.3526011560694, Blast_Score=652, Evalue=0.0,
Organism=Escherichia coli, GI1789848, Length=346, Percent_Identity=36.1271676300578, Blast_Score=200, Evalue=9e-53,
Organism=Escherichia coli, GI1787574, Length=211, Percent_Identity=28.9099526066351, Blast_Score=87, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6323975, Length=257, Percent_Identity=24.9027237354086, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 38287; Mature: 38156

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDRIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDEAKVKVDWPTVTVVSEPKHLF
CCCCEEEEEEEECCCCCCCCCCEEECCCCCEEEEECCCCCCEEEEECCEEEEEECCHHHC
NDPHLDLIVIPTPNDTHFPLAKAALEAGKHVIVDKPFTVTLSQARELDSLARSLGRVLSV
CCCCEEEEEEECCCCCCCHHHHHHHHCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHH
FHNRRWDSDFLTLKALLAEGTLGEVAYFESHFDRFRPQVRDRWREQGGPGSGIWYDLGPH
HHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCEECCCHH
LLDQAINLFGLPVSLTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIV
HHHHHHHHHCCCCEEEEEHHHCCCCCCCHHHHHHHHHCCCCEEEEEHHHHHHHCCCEEEE
HGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRDGVLTRVEGDARVEETLLTIPGNYP
ECCCCCEEEECCCCHHHHHCCCCCCCHHHCCCCCCCCEEEEECCCCCEEEEEEECCCCCC
AYYAAIRDALKGEGENPVPASQAIQIMELIELGIESAKHRATLSLA
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure 
SDRIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDEAKVKVDWPTVTVVSEPKHLF
CCCEEEEEEEECCCCCCCCCCEEECCCCCEEEEECCCCCCEEEEECCEEEEEECCHHHC
NDPHLDLIVIPTPNDTHFPLAKAALEAGKHVIVDKPFTVTLSQARELDSLARSLGRVLSV
CCCCEEEEEEECCCCCCCHHHHHHHHCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHH
FHNRRWDSDFLTLKALLAEGTLGEVAYFESHFDRFRPQVRDRWREQGGPGSGIWYDLGPH
HHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCEECCCHH
LLDQAINLFGLPVSLTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIV
HHHHHHHHHCCCCEEEEEHHHCCCCCCCHHHHHHHHHCCCCEEEEEHHHHHHHCCCEEEE
HGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRDGVLTRVEGDARVEETLLTIPGNYP
ECCCCCEEEECCCCHHHHHCCCCCCCHHHCCCCCCCCEEEEECCCCCEEEEEEECCCCCC
AYYAAIRDALKGEGENPVPASQAIQIMELIELGIESAKHRATLSLA
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]