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The map label for this gene is ydhP [H]

Identifier: 218548748

GI number: 218548748

Start: 1424605

End: 1425771

Strand: Direct

Name: ydhP [H]

Synonym: EFER_1387

Alternate gene names: 218548748

Gene position: 1424605-1425771 (Clockwise)

Preceding gene: 218548746

Following gene: 218548751

Centisome position: 31.05

GC content: 52.01

Gene sequence:

>1167_bases
ATGAAGATAAATTATCCCTTGCTGGCGCTGGCAATTGGCGCATTTGGTATTGGGACAACGGAATTCTCCCCAATGGGCTT
GTTGCCTGTGATCGCTCGTGGTGTGGATGTCTCCATACCTGCGGCTGGTATGTTGATTAGTGCCTATGCCGTGGGAGTCA
TGGTTGGTGCGCCTTTAATGACATTGTTACTTTCTCATCGCGCCCGACGTAACGCCCTGATTTTTCTGATGGCAATCTTT
ACGCTTGGTAATGTACTTTCTGCGATTGCGCCAGATTACACCACATTAATGTTGTCACGTATTTTGACCAGCCTTAACCA
TGGCGCCTTCTTCGGTCTTGGTTCGGTTGTCGCTGCAAGCGTAGTGCCTAAGCACAAGCAGGCGAGTGCCGTTGCCACGA
TGTTTATGGGGTTGACGCTGGCTAATATTGGTGGCGTACCCGCAGCCACCTGGCTTGGTGAAACAATTGGCTGGCGAATG
TCCTTTATGGCAACGGCAGTGTTAGGGGTGGTTTCAATGGTCAGTCTTTGGTTCTCTTTACCAAAAGGTGGGGCAGGGGC
ACGGCCAGATGTCAAAAAAGAACTGGGTGTGCTGTTACGACCGCAAGTGCTCTCAGCACTGCTGACCACGGTACTGGGCG
CGGGGGCCATGTTTACGCTCTATACCTATATCTCTCCTGTATTACAAACCATTACCCATGCGACGCCTGTGTTCGTAACG
GCAATGCTGGTGTTGATTGGTGTTGGTTTTTCTATCGGCAATTACCTGGGCGGCAAATTTGCTGATCGCTCTGTGAATGG
AACGCTAAAAGGCTTTTTATTCTTGCTGATGGTGATTATGTTGCTGATTCCATTCCTGGCACGCAATGAGTATGGTGCCG
CGGTCGCGATGGTTGTCTGGGGGGCGGCTACCTTTGCTGTTGTTCCACCATTGCAAATGCGGGTGATGCGCGTTGCCAGT
GAAGCGCCGGGGCTATCTTCTTCGGTCAATATTGGGGCGTTTAATTTAGGAAACGCTTTAGGTGCGGCAGCTGGTGGCGC
GGTGATATCCGGCGGCCTGGGCTACAGTTTTGTTCCGGTGATGGGGGCAATCATTGCCGGGGTGGCGTTACTGTTGGTGT
TTATTTCGGCGCGTAAACAACCTGAGGCGGTATGCGTGGCGGGTTGA

Upstream 100 bases:

>100_bases
TGTTTTGTAAATTTGTTATTTTCATTATTTTGTGATTGATGTCATGCTTTTCTCCACTTACTTAGGTATCGCGTAAAACG
CGAAGACGTGGAGTCGAAGC

Downstream 100 bases:

>100_bases
TAGCAAACAAAAACGCAGAAGGGAAAGCCTTCTGCGTTATCACAATTACTCAGCGAAGTTTTTCGCAGCAAATTCCCAGT
TTACCAGTGCCCAGAAATGC

Product: efflux protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRNALIFLMAIF
TLGNVLSAIAPDYTTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRM
SFMATAVLGVVSMVSLWFSLPKGGAGARPDVKKELGVLLRPQVLSALLTTVLGAGAMFTLYTYISPVLQTITHATPVFVT
AMLVLIGVGFSIGNYLGGKFADRSVNGTLKGFLFLLMVIMLLIPFLARNEYGAAVAMVVWGAATFAVVPPLQMRVMRVAS
EAPGLSSSVNIGAFNLGNALGAAAGGAVISGGLGYSFVPVMGAIIAGVALLLVFISARKQPEAVCVAG

Sequences:

>Translated_388_residues
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRNALIFLMAIF
TLGNVLSAIAPDYTTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRM
SFMATAVLGVVSMVSLWFSLPKGGAGARPDVKKELGVLLRPQVLSALLTTVLGAGAMFTLYTYISPVLQTITHATPVFVT
AMLVLIGVGFSIGNYLGGKFADRSVNGTLKGFLFLLMVIMLLIPFLARNEYGAAVAMVVWGAATFAVVPPLQMRVMRVAS
EAPGLSSSVNIGAFNLGNALGAAAGGAVISGGLGYSFVPVMGAIIAGVALLLVFISARKQPEAVCVAG
>Mature_388_residues
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRNALIFLMAIF
TLGNVLSAIAPDYTTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRM
SFMATAVLGVVSMVSLWFSLPKGGAGARPDVKKELGVLLRPQVLSALLTTVLGAGAMFTLYTYISPVLQTITHATPVFVT
AMLVLIGVGFSIGNYLGGKFADRSVNGTLKGFLFLLMVIMLLIPFLARNEYGAAVAMVVWGAATFAVVPPLQMRVMRVAS
EAPGLSSSVNIGAFNLGNALGAAAGGAVISGGLGYSFVPVMGAIIAGVALLLVFISARKQPEAVCVAG

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=387, Percent_Identity=94.5736434108527, Blast_Score=686, Evalue=0.0,
Organism=Escherichia coli, GI1786595, Length=380, Percent_Identity=31.5789473684211, Blast_Score=199, Evalue=3e-52,
Organism=Escherichia coli, GI1787808, Length=376, Percent_Identity=30.5851063829787, Blast_Score=121, Evalue=8e-29,
Organism=Escherichia coli, GI145693198, Length=327, Percent_Identity=26.605504587156, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40005; Mature: 40005

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHCCCCCCEEEECC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]