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The map label for this gene is yobB [H]

Identifier: 218548596

GI number: 218548596

Start: 1272247

End: 1272936

Strand: Reverse

Name: yobB [H]

Synonym: EFER_1230

Alternate gene names: 218548596

Gene position: 1272936-1272247 (Counterclockwise)

Preceding gene: 218548597

Following gene: 218548595

Centisome position: 27.74

GC content: 46.81

Gene sequence:

>690_bases
TTGCTAACAGGCACTATGAAAAGGAAGTCATTATGTCCCCCCTGGAAGATCGCAGCCGCCCAATACGAACCTCGTCAGAT
TTCACTATCAGAAAACATTTCTCTCCATCTGGAATTTATTCACGCTGCTGCCAGGCAGTATTGCGAATTGCTGGTTTTCC
CTTCCCTGTCTTTGCTCGGATGTGATGAGACCAAAGGCACGCTTCCCCCACCACCGGATGACCTGTTATTGCAACCCTTA
GCGTATGCCGCAGCCTCCAGGCGGATTACAGTTATCGCTGGTTTACCTGTAGAACAAAACGACCATTTTGTCAGAGGCAT
TGCCGTTTTCGCCCCCTGGATGACCAAACCACATTATTTTCCCCAAAGCCACGGAGCCTGTCTTTCCAGACACTTAAAAC
ACATTAATGTGATAACCAGGCAACCTGATGCGCTTGATTTGGACTCAACCAGTTCGCTTTTCACAACTTTCCAGAACGTA
AGTGAACGAGACTTGATAGCATCGACGTCTCATTTACAGTATTTTTCCCACAAGTATTCCATTGCTGTGCTGATGGCAAA
TGCACGAGGTAGCAGTGCATTATGGGATGAACACGGACAGCTGATTGTTCGGGCTGATCGGGGATCATTATTATTAACCG
GACAAAGAACGAATGAAGGTTGGCAAGGAGATATCATTCCTTTACGCTAA

Upstream 100 bases:

>100_bases
TGCCCTACGAACCCAAAATGAAATAAATTAGCACTATAATTACAACTCCTTACATGTTGCCTGTTAATTTATAAGCAAAT
TCTTAACCTATGCTTTAGAG

Downstream 100 bases:

>100_bases
GCTTTTTGGTCAGGAGCAAAGCCATGTTGCGCGTCATCGATACAGAAACTTGTGGTTTACAGGGCGGAATTGTTGAAATC
GCGTCTGTTGACGTGGTGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MLTGTMKRKSLCPPWKIAAAQYEPRQISLSENISLHLEFIHAAARQYCELLVFPSLSLLGCDETKGTLPPPPDDLLLQPL
AYAAASRRITVIAGLPVEQNDHFVRGIAVFAPWMTKPHYFPQSHGACLSRHLKHINVITRQPDALDLDSTSSLFTTFQNV
SERDLIASTSHLQYFSHKYSIAVLMANARGSSALWDEHGQLIVRADRGSLLLTGQRTNEGWQGDIIPLR

Sequences:

>Translated_229_residues
MLTGTMKRKSLCPPWKIAAAQYEPRQISLSENISLHLEFIHAAARQYCELLVFPSLSLLGCDETKGTLPPPPDDLLLQPL
AYAAASRRITVIAGLPVEQNDHFVRGIAVFAPWMTKPHYFPQSHGACLSRHLKHINVITRQPDALDLDSTSSLFTTFQNV
SERDLIASTSHLQYFSHKYSIAVLMANARGSSALWDEHGQLIVRADRGSLLLTGQRTNEGWQGDIIPLR
>Mature_229_residues
MLTGTMKRKSLCPPWKIAAAQYEPRQISLSENISLHLEFIHAAARQYCELLVFPSLSLLGCDETKGTLPPPPDDLLLQPL
AYAAASRRITVIAGLPVEQNDHFVRGIAVFAPWMTKPHYFPQSHGACLSRHLKHINVITRQPDALDLDSTSSLFTTFQNV
SERDLIASTSHLQYFSHKYSIAVLMANARGSSALWDEHGQLIVRADRGSLLLTGQRTNEGWQGDIIPLR

Specific function: Unknown

COG id: COG0388

COG function: function code R; Predicted amidohydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788148, Length=215, Percent_Identity=67.4418604651163, Blast_Score=307, Evalue=4e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003010 [H]

Pfam domain/function: PF00795 CN_hydrolase [H]

EC number: NA

Molecular weight: Translated: 25524; Mature: 25524

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTGTMKRKSLCPPWKIAAAQYEPRQISLSENISLHLEFIHAAARQYCELLVFPSLSLLG
CCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCEEEHHHHHHHHHHHHHEHCCCCCEEEE
CDETKGTLPPPPDDLLLQPLAYAAASRRITVIAGLPVEQNDHFVRGIAVFAPWMTKPHYF
CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCC
PQSHGACLSRHLKHINVITRQPDALDLDSTSSLFTTFQNVSERDLIASTSHLQYFSHKYS
CCCCHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEE
IAVLMANARGSSALWDEHGQLIVRADRGSLLLTGQRTNEGWQGDIIPLR
EEEEEECCCCCCCEECCCCCEEEEECCCCEEEEECCCCCCCCCCEEECC
>Mature Secondary Structure
MLTGTMKRKSLCPPWKIAAAQYEPRQISLSENISLHLEFIHAAARQYCELLVFPSLSLLG
CCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCEEEHHHHHHHHHHHHHEHCCCCCEEEE
CDETKGTLPPPPDDLLLQPLAYAAASRRITVIAGLPVEQNDHFVRGIAVFAPWMTKPHYF
CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCC
PQSHGACLSRHLKHINVITRQPDALDLDSTSSLFTTFQNVSERDLIASTSHLQYFSHKYS
CCCCHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEE
IAVLMANARGSSALWDEHGQLIVRADRGSLLLTGQRTNEGWQGDIIPLR
EEEEEECCCCCCCEECCCCCEEEEECCCCEEEEECCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]