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The map label for this gene is yfhH [H]

Identifier: 218547912

GI number: 218547912

Start: 511956

End: 512804

Strand: Reverse

Name: yfhH [H]

Synonym: EFER_0514

Alternate gene names: 218547912

Gene position: 512804-511956 (Counterclockwise)

Preceding gene: 218547915

Following gene: 218547911

Centisome position: 11.18

GC content: 51.83

Gene sequence:

>849_bases
ATGAACGGCTTACTTCGTATCCGTCAGCGTTACCAGGGGCTTGCCCAGAGTGATAAAAAACTGGCGGACTATTTGCTACT
ACAACCTGATACGGCGCGCCATTTAAGCTCTCAGCAACTGGCCAACGAAGCCGGAGTCAGTCAGTCCAGCGTCGTGAAGT
TCGCGCAAAAACTCGGCTATAAAGGTTTTCCGGCATTGAAGTTGGCGTTGAGTGAAGCGCTGGCAAGCCAGCCGGAATCC
CCTTCTGTGCCCATTCATAACCAAATCCGTGGTGATGATCCGTTACGGCTGGTCGGCGAAAAACTGATTAAAGAAAATAC
TGCCGCCATGTACGCAACGCTAAACGTTAATAGTGAAGAGAAACTGCATGAAGGCGTGGCAATGTTGCGCTCTGCGCGGC
GGATAATTCTGACCGGTATTGGCGCTTCGGGTCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAAT
GCCGCCGCAGTGCGCGATATGCATGCGCTACTCGCCACAGTCCAGGCGTCGTCCCCTGACGATCTGTTATTAGCCATTTC
CTACACTGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTACTGGCGATTACCG
GCTTTACTCCCAATGCCCTGCAACAACGCGCTTCTCACTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCT
GCAATCTCTGCTTGTCACGCTCAGGGAATGTTAACGGATTTACTGTTCATTGCTCTGATTCAGCAGGATCTGGAGCTGGC
ACCAGAACGTATTCGTCATAGTGAAGCGCTGGTGAAAAAACTGGTTTGA

Upstream 100 bases:

>100_bases
AATTTTTAATTCATGGCAATTAGCAGCAATGGAATATAAAATTCACTCGCGTGTGTTTCATATTGCCTGTTGTCGCCATA
ATTTCATCGCGAGGAAAGAT

Downstream 100 bases:

>100_bases
GTAAAGAATGCGCGTATAATGCCCGCCCGGTTTGTGTTGTTTTGAGAGTTTCCTTATGGCGCTGTTAATCACTAAAAAAT
GCATCAATTGTGATATGTGT

Product: DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MNGLLRIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGYKGFPALKLALSEALASQPES
PSVPIHNQIRGDDPLRLVGEKLIKENTAAMYATLNVNSEEKLHEGVAMLRSARRIILTGIGASGLVAQNFAWKLMKIGFN
AAAVRDMHALLATVQASSPDDLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPNALQQRASHCLYTIAEEQATNSA
AISACHAQGMLTDLLFIALIQQDLELAPERIRHSEALVKKLV

Sequences:

>Translated_282_residues
MNGLLRIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGYKGFPALKLALSEALASQPES
PSVPIHNQIRGDDPLRLVGEKLIKENTAAMYATLNVNSEEKLHEGVAMLRSARRIILTGIGASGLVAQNFAWKLMKIGFN
AAAVRDMHALLATVQASSPDDLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPNALQQRASHCLYTIAEEQATNSA
AISACHAQGMLTDLLFIALIQQDLELAPERIRHSEALVKKLV
>Mature_282_residues
MNGLLRIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGYKGFPALKLALSEALASQPES
PSVPIHNQIRGDDPLRLVGEKLIKENTAAMYATLNVNSEEKLHEGVAMLRSARRIILTGIGASGLVAQNFAWKLMKIGFN
AAAVRDMHALLATVQASSPDDLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPNALQQRASHCLYTIAEEQATNSA
AISACHAQGMLTDLLFIALIQQDLELAPERIRHSEALVKKLV

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082130, Length=282, Percent_Identity=98.936170212766, Blast_Score=567, Evalue=1e-163,
Organism=Escherichia coli, GI1788767, Length=272, Percent_Identity=35.2941176470588, Blast_Score=157, Evalue=8e-40,
Organism=Escherichia coli, GI1788159, Length=195, Percent_Identity=27.1794871794872, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87082369, Length=274, Percent_Identity=21.5328467153285, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 30616; Mature: 30616

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGLLRIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGY
CCHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
KGFPALKLALSEALASQPESPSVPIHNQIRGDDPLRLVGEKLIKENTAAMYATLNVNSEE
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCHH
KLHEGVAMLRSARRIILTGIGASGLVAQNFAWKLMKIGFNAAAVRDMHALLATVQASSPD
HHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
DLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPNALQQRASHCLYTIAEEQATNSA
CEEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHH
AISACHAQGMLTDLLFIALIQQDLELAPERIRHSEALVKKLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNGLLRIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGY
CCHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
KGFPALKLALSEALASQPESPSVPIHNQIRGDDPLRLVGEKLIKENTAAMYATLNVNSEE
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCHH
KLHEGVAMLRSARRIILTGIGASGLVAQNFAWKLMKIGFNAAAVRDMHALLATVQASSPD
HHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
DLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPNALQQRASHCLYTIAEEQATNSA
CEEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHH
AISACHAQGMLTDLLFIALIQQDLELAPERIRHSEALVKKLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 1602968; 7984428 [H]