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The map label for this gene is pdtaR [H]

Identifier: 218532838

GI number: 218532838

Start: 5296800

End: 5297387

Strand: Reverse

Name: pdtaR [H]

Synonym: Mchl_4961

Alternate gene names: 218532838

Gene position: 5297387-5296800 (Counterclockwise)

Preceding gene: 218532843

Following gene: 218532837

Centisome position: 91.68

GC content: 68.37

Gene sequence:

>588_bases
ATGACCGAGACCAGCCTCACCGTCGCCGTGATCGATCCGAGCCGCGCCCGCGCAGCGATCCTGGAGGAGGGTCTTCGCGC
CTCCGGCGTCGGCAACGTCGTCGTGCTTGCGGACGGGCCGGACCTCCAGGCGCGGGTGGCGAGCCTGAAGCCCGACGTGA
TCGTGGTCCATCTGGAGAGCCCGAGCCGGGACGTGCTGGAGCAGATGTCGGGCCTGTCCCGGCAGGCCGAGCGGCCGGTG
GCGATGTTCGTGGACCGCTCGGACCAGACCATGATGCAGGCGGCGGTCGATGCGGGCATCTCGGCCTATGTGGTGGACGG
GCTGCGCTCGGAACGGATCCGACCGATCCTCGACATCGCGATCCTGCGCTTCAATGCCTTCGCCCGGCTCCAGCGCGAAC
TCGACGAGGCCCGCTCGGAACTCGCCGACCGCAAACTGATCGAGCGCGCCAAGGGCATCCTGATGACGCGCAAGGGCATG
AGCGAGGACGAGGCCTACAAGCTCCTGCGGCGGCAGGCGATGAACGAGAAGCGCAAGATCGTCGACATCGCCCGCGCCAT
CGTCACCGCGGCGGATCTACTCGGATGA

Upstream 100 bases:

>100_bases
GTGCTTGCGCACGTGCCTCAATGTAGACGGTCCGCCTTCTTTACCCCGTACCTTCGCCGCCCATGCCTTCCTCGAACGGA
TCGAACCACTCCGGCCCTCG

Downstream 100 bases:

>100_bases
GGATCAGACTCGGATACGTCCCCCTCACCGACGCCGCCCCCGTGATCGCGGCGGCGGAACTGGGCTTCGCACGCGCCGAG
GGGCTCGAGATCGAACTCGC

Product: response regulator receiver and ANTAR domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MTETSLTVAVIDPSRARAAILEEGLRASGVGNVVVLADGPDLQARVASLKPDVIVVHLESPSRDVLEQMSGLSRQAERPV
AMFVDRSDQTMMQAAVDAGISAYVVDGLRSERIRPILDIAILRFNAFARLQRELDEARSELADRKLIERAKGILMTRKGM
SEDEAYKLLRRQAMNEKRKIVDIARAIVTAADLLG

Sequences:

>Translated_195_residues
MTETSLTVAVIDPSRARAAILEEGLRASGVGNVVVLADGPDLQARVASLKPDVIVVHLESPSRDVLEQMSGLSRQAERPV
AMFVDRSDQTMMQAAVDAGISAYVVDGLRSERIRPILDIAILRFNAFARLQRELDEARSELADRKLIERAKGILMTRKGM
SEDEAYKLLRRQAMNEKRKIVDIARAIVTAADLLG
>Mature_194_residues
TETSLTVAVIDPSRARAAILEEGLRASGVGNVVVLADGPDLQARVASLKPDVIVVHLESPSRDVLEQMSGLSRQAERPVA
MFVDRSDQTMMQAAVDAGISAYVVDGLRSERIRPILDIAILRFNAFARLQRELDEARSELADRKLIERAKGILMTRKGMS
EDEAYKLLRRQAMNEKRKIVDIARAIVTAADLLG

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 21451; Mature: 21320

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETSLTVAVIDPSRARAAILEEGLRASGVGNVVVLADGPDLQARVASLKPDVIVVHLES
CCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHCCCCEEEEEECC
PSRDVLEQMSGLSRQAERPVAMFVDRSDQTMMQAAVDAGISAYVVDGLRSERIRPILDIA
CCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ILRFNAFARLQRELDEARSELADRKLIERAKGILMTRKGMSEDEAYKLLRRQAMNEKRKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
VDIARAIVTAADLLG
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
TETSLTVAVIDPSRARAAILEEGLRASGVGNVVVLADGPDLQARVASLKPDVIVVHLES
CCCEEEEEEECCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHCCCCEEEEEECC
PSRDVLEQMSGLSRQAERPVAMFVDRSDQTMMQAAVDAGISAYVVDGLRSERIRPILDIA
CCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ILRFNAFARLQRELDEARSELADRKLIERAKGILMTRKGMSEDEAYKLLRRQAMNEKRKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
VDIARAIVTAADLLG
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]