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The map label for this gene is yafK [H]

Identifier: 218532798

GI number: 218532798

Start: 5245073

End: 5246293

Strand: Reverse

Name: yafK [H]

Synonym: Mchl_4921

Alternate gene names: 218532798

Gene position: 5246293-5245073 (Counterclockwise)

Preceding gene: 218532799

Following gene: 218532797

Centisome position: 90.8

GC content: 69.86

Gene sequence:

>1221_bases
ATGCTTCCCCCAAACCGCTCTCGAGGCTCTGTGAGATCCTTCCTCAGAACCTTGATTCCGGGGCTGGTCGGGTTGGCGAT
CCTCACCGCGTCGAACACGCTCGCCCGGGCCGACAAGGCGAATGCGCCGATCCCGGCCGCGACGCTTGCGCTGATGGCCG
CGCGCGGCACCAACGCCGCCTCGCCGATCGTGCTGCGGGCCTACAAGAAGGAATCCGAGATCGAGGTCTGGAAGCGCAAC
GCCAGCGGGCGCTACGTGCCGATCAAGACCTATCCAATCTGCCGCTGGTCCGGGCAGCTCGGGCCGAAGACCAAGAGCGG
CGACCGGCAGACGCCGGAGGGGTTCTACACGGTGGCGAAAAGCCAGATGAACCCGAACTCGCGCTACTACCTCTCCTTCG
ACGTCGGCTACCCCAACGCCTACGACCGGGCGCACGGCTCCACCGGCTCGGCGGTGATGGTGCACGGCGTCTGCTCGTCG
ATGGGCTGCTTTGCCATGACGGATGCGGTGGCGGGCGAACTGTTCGCGATCGCCCGCGAGGCGTTCGCCGGGGGGCAGGT
CGCGTTTCAGTTCCAGTCCTTCCCGTTCCGGATGACCGCCGCGAACATGGCCCGGCACCGGACCGATCCGAACATCGCCT
TCTGGCGCCAGTTGAAGGAGGGCTCGGACCGCTTCGAGGCGACCGGCGAGGAGCCGGCCGTGAGCGTCACGAGCGGCCGC
TACACCTTCGCGCCCTCGCGCGATCCGGCCAAGGAAGCGGCCTTCACCGCCCTGCACAAGGACGAGACCGACCGCATCAC
CGCCCTGGTGGAGGAGGGCGCGGCGGCCGTGCGCACGACCTATTCCGACGGCGGCCAGCACGCCTTCTGGGCAGCGCGGA
TCCTTCAGGGTCATCCGGTGGGCGACATCAGCCGGCCGGAGGCGCTGGCCTATGCCGGCCAGGAGGTCGTGCTGATCCCC
GCTCGCCGCCGGGCGCCGCCACCGCCGCCCGTACCGGACGCCGTATGGGCGGCCTGGATCGGCACGGCCAGCCCGTCGCT
GACGGTGCGGACCGCGGGTTTCGTGCCGCCCTACGTCGCTCCCACCGCCCGCATCACGGCACCGGTCACGCGCTATGCGC
AGACCTGGCCGAGCTTCGCTCGCGCGGCGATCGAGCGTACGCTGCCGCCGCCAGACCTCGCCCCTTCGCAACCCCCGATT
GAGAAACTGGCCCAGCGCTGA

Upstream 100 bases:

>100_bases
TCTGAGCGCTTCCCTTTCCCGCAAAACCGCCCCAAAGCTTGTGCACGATCCGGTTCCGTCGCCCGTGGGCACCGCCGGTC
GGCCTCTATCGAGACGGTGC

Downstream 100 bases:

>100_bases
CTTGGAGCCGCTCAAAACGGCGTGTGCGAGCACGCACACAAACCCGAATGGCGGCCCCCCATCTCCGCACTGTACACTCG
GAGCCTGAAGAGGGGCCGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MLPPNRSRGSVRSFLRTLIPGLVGLAILTASNTLARADKANAPIPAATLALMAARGTNAASPIVLRAYKKESEIEVWKRN
ASGRYVPIKTYPICRWSGQLGPKTKSGDRQTPEGFYTVAKSQMNPNSRYYLSFDVGYPNAYDRAHGSTGSAVMVHGVCSS
MGCFAMTDAVAGELFAIAREAFAGGQVAFQFQSFPFRMTAANMARHRTDPNIAFWRQLKEGSDRFEATGEEPAVSVTSGR
YTFAPSRDPAKEAAFTALHKDETDRITALVEEGAAAVRTTYSDGGQHAFWAARILQGHPVGDISRPEALAYAGQEVVLIP
ARRRAPPPPPVPDAVWAAWIGTASPSLTVRTAGFVPPYVAPTARITAPVTRYAQTWPSFARAAIERTLPPPDLAPSQPPI
EKLAQR

Sequences:

>Translated_406_residues
MLPPNRSRGSVRSFLRTLIPGLVGLAILTASNTLARADKANAPIPAATLALMAARGTNAASPIVLRAYKKESEIEVWKRN
ASGRYVPIKTYPICRWSGQLGPKTKSGDRQTPEGFYTVAKSQMNPNSRYYLSFDVGYPNAYDRAHGSTGSAVMVHGVCSS
MGCFAMTDAVAGELFAIAREAFAGGQVAFQFQSFPFRMTAANMARHRTDPNIAFWRQLKEGSDRFEATGEEPAVSVTSGR
YTFAPSRDPAKEAAFTALHKDETDRITALVEEGAAAVRTTYSDGGQHAFWAARILQGHPVGDISRPEALAYAGQEVVLIP
ARRRAPPPPPVPDAVWAAWIGTASPSLTVRTAGFVPPYVAPTARITAPVTRYAQTWPSFARAAIERTLPPPDLAPSQPPI
EKLAQR
>Mature_406_residues
MLPPNRSRGSVRSFLRTLIPGLVGLAILTASNTLARADKANAPIPAATLALMAARGTNAASPIVLRAYKKESEIEVWKRN
ASGRYVPIKTYPICRWSGQLGPKTKSGDRQTPEGFYTVAKSQMNPNSRYYLSFDVGYPNAYDRAHGSTGSAVMVHGVCSS
MGCFAMTDAVAGELFAIAREAFAGGQVAFQFQSFPFRMTAANMARHRTDPNIAFWRQLKEGSDRFEATGEEPAVSVTSGR
YTFAPSRDPAKEAAFTALHKDETDRITALVEEGAAAVRTTYSDGGQHAFWAARILQGHPVGDISRPEALAYAGQEVVLIP
ARRRAPPPPPVPDAVWAAWIGTASPSLTVRTAGFVPPYVAPTARITAPVTRYAQTWPSFARAAIERTLPPPDLAPSQPPI
EKLAQR

Specific function: Unknown

COG id: COG3034

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1786418, Length=183, Percent_Identity=44.8087431693989, Blast_Score=187, Evalue=1e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 43842; Mature: 43842

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPPNRSRGSVRSFLRTLIPGLVGLAILTASNTLARADKANAPIPAATLALMAARGTNAA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHCCCCCC
SPIVLRAYKKESEIEVWKRNASGRYVPIKTYPICRWSGQLGPKTKSGDRQTPEGFYTVAK
CCEEEEECCCCCCHHHEEECCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCHHHHHHH
SQMNPNSRYYLSFDVGYPNAYDRAHGSTGSAVMVHGVCSSMGCFAMTDAVAGELFAIARE
HCCCCCCEEEEEEECCCCCHHHHCCCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHH
AFAGGQVAFQFQSFPFRMTAANMARHRTDPNIAFWRQLKEGSDRFEATGEEPAVSVTSGR
HHCCCEEEEEECCCCEEEHHHHHHHHCCCCCHHHHHHHHCCCCHHHCCCCCCEEEEECCE
YTFAPSRDPAKEAAFTALHKDETDRITALVEEGAAAVRTTYSDGGQHAFWAARILQGHPV
EEECCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCC
GDISRPEALAYAGQEVVLIPARRRAPPPPPVPDAVWAAWIGTASPSLTVRTAGFVPPYVA
CCCCCCHHHHHCCCEEEEEEHHCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCC
PTARITAPVTRYAQTWPSFARAAIERTLPPPDLAPSQPPIEKLAQR
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCC
>Mature Secondary Structure
MLPPNRSRGSVRSFLRTLIPGLVGLAILTASNTLARADKANAPIPAATLALMAARGTNAA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHCCCCCC
SPIVLRAYKKESEIEVWKRNASGRYVPIKTYPICRWSGQLGPKTKSGDRQTPEGFYTVAK
CCEEEEECCCCCCHHHEEECCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCHHHHHHH
SQMNPNSRYYLSFDVGYPNAYDRAHGSTGSAVMVHGVCSSMGCFAMTDAVAGELFAIARE
HCCCCCCEEEEEEECCCCCHHHHCCCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHH
AFAGGQVAFQFQSFPFRMTAANMARHRTDPNIAFWRQLKEGSDRFEATGEEPAVSVTSGR
HHCCCEEEEEECCCCEEEHHHHHHHHCCCCCHHHHHHHHCCCCHHHCCCCCCEEEEECCE
YTFAPSRDPAKEAAFTALHKDETDRITALVEEGAAAVRTTYSDGGQHAFWAARILQGHPV
EEECCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCC
GDISRPEALAYAGQEVVLIPARRRAPPPPPVPDAVWAAWIGTASPSLTVRTAGFVPPYVA
CCCCCCHHHHHCCCEEEEEEHHCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCC
PTARITAPVTRYAQTWPSFARAAIERTLPPPDLAPSQPPIEKLAQR
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]