Click here to switch to the map view.

The map label for this gene is yhfW [H]

Identifier: 218232430

GI number: 218232430

Start: 388682

End: 390208

Strand: Reverse

Name: yhfW [H]

Synonym: BCB4264_A0413

Alternate gene names: 218232430

Gene position: 390208-388682 (Counterclockwise)

Preceding gene: 218235175

Following gene: 218236094

Centisome position: 7.2

GC content: 36.74

Gene sequence:

>1527_bases
ATGACAAGTGATACATTTCCACAACTGCCGCTATCTTATTGGATTGAATCTACTCAGTTTCCTACTTTCCCTCGTTTATC
CGAAAATATAAAGACGAAAGTTGCTATTATCGGTGCTGGTATTACAGGTATTACTACCGCCTATTTACTTGCAAAAGAAG
GCATCGATGTTGTTTTAATTGATTCTGGTCGTATTTTAAATGGAACAACTGGGCATACAACAGCGAAAGTAACAGCACAA
CATGATCTTATTTATGATGAATTAATAAATCATTTCGGTGTAGAAAAGGCCGGGCTTTACTATGAATCAAATAATCAGGC
TCTACAATTCATAAATGAAACTGTTCAAACATATAAAATCGACTGTAATTTCTCAAATGAAGATTCATATTTATATACAA
CTACCGATAACGGATTAAGAAATTTAACGAAAGAATATGAAGCTTATCAAAAATTAAATATACCTTGTGACTATGTTCAA
TCTCTATCGATTCCTATTCCAGTACAATCTGCACTTGTAATGAAAAATCAAGCACAATTCCATCCCCTTCTTTATTTAAA
AACACTTTTAGAAAAGTTTGTGGAGATGGGCGGAAAGCTCTACGAACAAACAACAGCTATGGATGTGGAAAAGGGAGATT
ATCCACAAATAATTACAAAAGAGGGCCATCATATCACTTGTGAATATGTCGTCTCTTGTTCACATTTTCCTTTTTATGAT
GCGAATAGCTTTTTCTTTACGCGAATGTACGCAGAACGCTCCTACGCTCTTGCAATAAAAGCAAAAACAGATTATCCAGG
TGGCATGTATTTAAGTATTGATGATCCAAAGCGCTCCTTACGCTATATAACAAACAATGGAGAAAAATTAATTTTGATTG
GCGGAGAGAGTCATAAAACAGGACAAGGAATAAATACGATGCTTCATTATGAAGCACTCTATTCTTTTGCTGAAGCAACT
TTTGGAATAGACGAAGTTCCTTATAGATGGTCAGCACAAGATTTAATCACTCTAGATAAGCTTCCTTATATCGGACATAT
TAACGAAAGAAATCCAAATATATTTGTTGCAACTGGATATCGCAAATGGGGAATGACAACTGGAACTGCTGCCGCTCACC
TACTGAAGGACTCCATCCTAAAAGTTCACAGTCCCTATAAAGAACTGTATGCACCATCACGCTTCCATGCAAATCCAGAT
ATAAAAACGTTCCTCTCCCAAAACATTGATGTTGCGAAACATTTAATTGCAGGAAAGATTGAAACCGCATTACGTAAGCC
AGAAGATCTCGAAGTTGGTGAAGGATCTGTCGTACATGTTAACGGTAAACGAGCAGGTGCTTATAAGGACAAAGAAGGAA
AATTACATATCGTCGATACAACTTGTACACATCTCGGCTGTGAAGTTGAATGGAATAATGGTGATTGTACTTGGGATTGC
CCTTGCCATGGTTCTCGTTTTTCAATTGAGGGAGACGTTCTTGAAGGCCCAGCAGATCAACCGTTAAAACGAGTTGATAA
TGAGTAA

Upstream 100 bases:

>100_bases
TTTTAATAAAAATAGACTACTTCTAAAACAACACACATGAATTTCATATAATATGGAAATATTAAAAGGAAAATTGTTCT
AAAATCAGGAGGTTTCCGCA

Downstream 100 bases:

>100_bases
ACAAATAAAGAAGTTCAACAAAATTACTGTTGAACTTCTTTATTTGTTATAAACCCTTTTCAGATAAAATTCGACACAAG
GAGGAAAATATTAACATTAA

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 508; Mature: 507

Protein sequence:

>508_residues
MTSDTFPQLPLSYWIESTQFPTFPRLSENIKTKVAIIGAGITGITTAYLLAKEGIDVVLIDSGRILNGTTGHTTAKVTAQ
HDLIYDELINHFGVEKAGLYYESNNQALQFINETVQTYKIDCNFSNEDSYLYTTTDNGLRNLTKEYEAYQKLNIPCDYVQ
SLSIPIPVQSALVMKNQAQFHPLLYLKTLLEKFVEMGGKLYEQTTAMDVEKGDYPQIITKEGHHITCEYVVSCSHFPFYD
ANSFFFTRMYAERSYALAIKAKTDYPGGMYLSIDDPKRSLRYITNNGEKLILIGGESHKTGQGINTMLHYEALYSFAEAT
FGIDEVPYRWSAQDLITLDKLPYIGHINERNPNIFVATGYRKWGMTTGTAAAHLLKDSILKVHSPYKELYAPSRFHANPD
IKTFLSQNIDVAKHLIAGKIETALRKPEDLEVGEGSVVHVNGKRAGAYKDKEGKLHIVDTTCTHLGCEVEWNNGDCTWDC
PCHGSRFSIEGDVLEGPADQPLKRVDNE

Sequences:

>Translated_508_residues
MTSDTFPQLPLSYWIESTQFPTFPRLSENIKTKVAIIGAGITGITTAYLLAKEGIDVVLIDSGRILNGTTGHTTAKVTAQ
HDLIYDELINHFGVEKAGLYYESNNQALQFINETVQTYKIDCNFSNEDSYLYTTTDNGLRNLTKEYEAYQKLNIPCDYVQ
SLSIPIPVQSALVMKNQAQFHPLLYLKTLLEKFVEMGGKLYEQTTAMDVEKGDYPQIITKEGHHITCEYVVSCSHFPFYD
ANSFFFTRMYAERSYALAIKAKTDYPGGMYLSIDDPKRSLRYITNNGEKLILIGGESHKTGQGINTMLHYEALYSFAEAT
FGIDEVPYRWSAQDLITLDKLPYIGHINERNPNIFVATGYRKWGMTTGTAAAHLLKDSILKVHSPYKELYAPSRFHANPD
IKTFLSQNIDVAKHLIAGKIETALRKPEDLEVGEGSVVHVNGKRAGAYKDKEGKLHIVDTTCTHLGCEVEWNNGDCTWDC
PCHGSRFSIEGDVLEGPADQPLKRVDNE
>Mature_507_residues
TSDTFPQLPLSYWIESTQFPTFPRLSENIKTKVAIIGAGITGITTAYLLAKEGIDVVLIDSGRILNGTTGHTTAKVTAQH
DLIYDELINHFGVEKAGLYYESNNQALQFINETVQTYKIDCNFSNEDSYLYTTTDNGLRNLTKEYEAYQKLNIPCDYVQS
LSIPIPVQSALVMKNQAQFHPLLYLKTLLEKFVEMGGKLYEQTTAMDVEKGDYPQIITKEGHHITCEYVVSCSHFPFYDA
NSFFFTRMYAERSYALAIKAKTDYPGGMYLSIDDPKRSLRYITNNGEKLILIGGESHKTGQGINTMLHYEALYSFAEATF
GIDEVPYRWSAQDLITLDKLPYIGHINERNPNIFVATGYRKWGMTTGTAAAHLLKDSILKVHSPYKELYAPSRFHANPDI
KTFLSQNIDVAKHLIAGKIETALRKPEDLEVGEGSVVHVNGKRAGAYKDKEGKLHIVDTTCTHLGCEVEWNNGDCTWDCP
CHGSRFSIEGDVLEGPADQPLKRVDNE

Specific function: Unknown

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1787559, Length=386, Percent_Identity=21.2435233160622, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR017941
- InterPro:   IPR005805 [H]

Pfam domain/function: PF01266 DAO; PF00355 Rieske [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 57102; Mature: 56971

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSDTFPQLPLSYWIESTQFPTFPRLSENIKTKVAIIGAGITGITTAYLLAKEGIDVVLI
CCCCCCCCCCHHHHCCCCCCCCCCCHHHCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEE
DSGRILNGTTGHTTAKVTAQHDLIYDELINHFGVEKAGLYYESNNQALQFINETVQTYKI
CCCEEECCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHCCEEEEE
DCNFSNEDSYLYTTTDNGLRNLTKEYEAYQKLNIPCDYVQSLSIPIPVQSALVMKNQAQF
EEEECCCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHCCCCCHH
HPLLYLKTLLEKFVEMGGKLYEQTTAMDVEKGDYPQIITKEGHHITCEYVVSCSHFPFYD
HHHHHHHHHHHHHHHHCCHHHHHHHHEECCCCCCCCEEECCCCEEEEEEEEEECCCCCCC
ANSFFFTRMYAERSYALAIKAKTDYPGGMYLSIDDPKRSLRYITNNGEKLILIGGESHKT
CCCEEEEEEECCCCEEEEEEEECCCCCCEEEEECCCHHHHHEEECCCCEEEEECCCCCCC
GQGINTMLHYEALYSFAEATFGIDEVPYRWSAQDLITLDKLPYIGHINERNPNIFVATGY
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEECCCCCCCEEEEECC
RKWGMTTGTAAAHLLKDSILKVHSPYKELYAPSRFHANPDIKTFLSQNIDVAKHLIAGKI
HHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHH
ETALRKPEDLEVGEGSVVHVNGKRAGAYKDKEGKLHIVDTTCTHLGCEVEWNNGDCTWDC
HHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEECHHHEEEEEEECCCCEEEEC
PCHGSRFSIEGDVLEGPADQPLKRVDNE
CCCCCEEEECCCCCCCCCCCHHHHCCCC
>Mature Secondary Structure 
TSDTFPQLPLSYWIESTQFPTFPRLSENIKTKVAIIGAGITGITTAYLLAKEGIDVVLI
CCCCCCCCCHHHHCCCCCCCCCCCHHHCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEE
DSGRILNGTTGHTTAKVTAQHDLIYDELINHFGVEKAGLYYESNNQALQFINETVQTYKI
CCCEEECCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHCCEEEEE
DCNFSNEDSYLYTTTDNGLRNLTKEYEAYQKLNIPCDYVQSLSIPIPVQSALVMKNQAQF
EEEECCCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHCCCCCHH
HPLLYLKTLLEKFVEMGGKLYEQTTAMDVEKGDYPQIITKEGHHITCEYVVSCSHFPFYD
HHHHHHHHHHHHHHHHCCHHHHHHHHEECCCCCCCCEEECCCCEEEEEEEEEECCCCCCC
ANSFFFTRMYAERSYALAIKAKTDYPGGMYLSIDDPKRSLRYITNNGEKLILIGGESHKT
CCCEEEEEEECCCCEEEEEEEECCCCCCEEEEECCCHHHHHEEECCCCEEEEECCCCCCC
GQGINTMLHYEALYSFAEATFGIDEVPYRWSAQDLITLDKLPYIGHINERNPNIFVATGY
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEECCCCCCCEEEEECC
RKWGMTTGTAAAHLLKDSILKVHSPYKELYAPSRFHANPDIKTFLSQNIDVAKHLIAGKI
HHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHH
ETALRKPEDLEVGEGSVVHVNGKRAGAYKDKEGKLHIVDTTCTHLGCEVEWNNGDCTWDC
HHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEECHHHEEEEEEECCCCEEEEC
PCHGSRFSIEGDVLEGPADQPLKRVDNE
CCCCCEEEECCCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]