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The map label for this gene is yciR [C]

Identifier: 218230897

GI number: 218230897

Start: 652852

End: 654555

Strand: Direct

Name: yciR [C]

Synonym: BCB4264_A0664

Alternate gene names: 218230897

Gene position: 652852-654555 (Clockwise)

Preceding gene: 218231438

Following gene: 218235459

Centisome position: 12.05

GC content: 34.27

Gene sequence:

>1704_bases
ATGCTAGAACAGAGAGGTCATGCATTATATGACTCTTCATTGCGAGATTTAAAGTTAGCATTAGATGAGTCTTCAATTGT
TGCAATTACAGATCGAAAAGGTCTTATTACATATGTAAATGATAAATTTTGTGAAATCTCTAAATACAAAAGAAAAGAAT
TAATTGGAAAAGATCACCGTATTTTAAATTCAGGACATCATCCAAAAACCTTTTTTCAAGACTTATGGAAACGTATTTTG
AATGGGAAAGTATGGACAGGTGAGATTCGGAATCGAGCAAAAGATGGTACATATTATTGGGTCAAAACAACAATTGTTCC
ATTTTTAAATGAAAAAGGAGAGCCATACCAATTTATCGCAATTCGAAATGATATTAGTAGTAGAAAAGAAGCGGAACATA
GATTGCGGCTAAGTGAAAGTCGTTATAGGGAACTTGCCTATCATGATGCTTTAACGAGTTTGCCTAACCGTTTACAATTA
ATAACGACCGTTAACGAATTGATTGCAGATAAAAAAGAATTTGGTATGATTTACTTTGATTTGGACCGTTTTAAATTAGT
AAATGATACATTAGGTCATATGATAGGGGATTTACTTTTAAGCGAAGTTGCTTCAAGGTTGCATTATGTACTAGGAGAGA
AAGATGTTCTGGCTAGGCTAGGTGGCGACGAATTTGTGCTGTTAACAAAAAATCATAGACAAGATGATATGAGTCAGTTA
GCGACATCTGTGTTGTCATGTTTTCAGGCACCATTTATGCTGGAAGGCCATGAAGTATACATTTCAGCTAGTCTAGGACT
TTGTTCTTATCCACAAGACGGACAAGATGTGGAAACGTTATTGAAAAACTCTGACTTAGCTATGTATAGTGCAAAAGAAC
AGGGGAGAAACGCTGCGTGTTTCTTTACAGATGAGCTACGCGCGAAAATAAATCGTAGAATGAAAGTTGAGTTTGCTTTG
CAAAAGGCAATTCGTGATGAAGAGTTAGATGTAGCATTGCAGCCTATTATTGATTTGAAAACGAAGAGATATTCTGGTAT
AGAAGCTCTAGTACGTTGTATGACAGAAGACGGACCTATTTCACCAAGCGAATTTATCCCTGTAGCTGAAGAGTCTGGAC
TTATTATAAAACTAGGAGACTGGGTATTAGAAAAATCATGTCGCTTGTTTAAAACATTGCCGAATTATCAAGAAGGACTA
AAGTTATCTGTGAATTTATCTATACAACAATTAATGCAGAAACGTTTTATTTTATCAGTACGTAGCATTTTAAAGAGAAC
TGGCTTTCCTCCGAACCGTTTAATATTAGAAATAACGGAAAGCATTGCAGTCCGTCATTTTGATTATATTATTGCTACAT
TACAAGAATTAAGAAATATGGGTGTTTTAATTGCTTTGGATGATTTCGGGACTGGCTATTCTTCCTTATATTATTTAAAA
CAACTACCACTGGATATTGTAAAAATTGATCGTAATTTTATTCGTGAATTTCATTATGATCACGCACAACCAGAACGAAC
GATTGTAAAATCCGTTATTGAAATTGCTCATAGTTTAAATTTAGCAGTAGTTGCTGAAGGAGTAGAAACAGTAGAGCAAG
AGAGTTTGTTACAATCAATGAGCTGTGATTATGTACAGGGATTTTATTATGCGAAACCTTTATCTGTAGGAGAGCTAAAA
GAAAAGTTAATTACAGATTTTTAA

Upstream 100 bases:

>100_bases
TAATTTATGTAATGGGCTAGTATTAGAAAATGAAATATCTCTATTTCTATGAAGAGAAACAGGTTGTGTTTTAGTCAGAT
AGAAGCAAGGAGAGATGCGC

Downstream 100 bases:

>100_bases
TAAAAAAGAGAAGCCAGCAGCTTCTCTTTATTTAATCCGTTTTTTGTGAGTCTTTCATTAGTACTGGATAAAGAATAAGA
CCTAATACGAACAATCCAAT

Product: sensory box/GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 567; Mature: 567

Protein sequence:

>567_residues
MLEQRGHALYDSSLRDLKLALDESSIVAITDRKGLITYVNDKFCEISKYKRKELIGKDHRILNSGHHPKTFFQDLWKRIL
NGKVWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDISSRKEAEHRLRLSESRYRELAYHDALTSLPNRLQL
ITTVNELIADKKEFGMIYFDLDRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQL
ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDELRAKINRRMKVEFAL
QKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTEDGPISPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPNYQEGL
KLSVNLSIQQLMQKRFILSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLYYLK
QLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLLQSMSCDYVQGFYYAKPLSVGELK
EKLITDF

Sequences:

>Translated_567_residues
MLEQRGHALYDSSLRDLKLALDESSIVAITDRKGLITYVNDKFCEISKYKRKELIGKDHRILNSGHHPKTFFQDLWKRIL
NGKVWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDISSRKEAEHRLRLSESRYRELAYHDALTSLPNRLQL
ITTVNELIADKKEFGMIYFDLDRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQL
ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDELRAKINRRMKVEFAL
QKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTEDGPISPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPNYQEGL
KLSVNLSIQQLMQKRFILSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLYYLK
QLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLLQSMSCDYVQGFYYAKPLSVGELK
EKLITDF
>Mature_567_residues
MLEQRGHALYDSSLRDLKLALDESSIVAITDRKGLITYVNDKFCEISKYKRKELIGKDHRILNSGHHPKTFFQDLWKRIL
NGKVWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDISSRKEAEHRLRLSESRYRELAYHDALTSLPNRLQL
ITTVNELIADKKEFGMIYFDLDRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQL
ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDELRAKINRRMKVEFAL
QKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTEDGPISPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPNYQEGL
KLSVNLSIQQLMQKRFILSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLYYLK
QLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLLQSMSCDYVQGFYYAKPLSVGELK
EKLITDF

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=435, Percent_Identity=36.0919540229885, Blast_Score=286, Evalue=3e-78,
Organism=Escherichia coli, GI87081921, Length=492, Percent_Identity=32.520325203252, Blast_Score=218, Evalue=8e-58,
Organism=Escherichia coli, GI226510982, Length=418, Percent_Identity=29.4258373205742, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=36.4016736401674, Blast_Score=145, Evalue=7e-36,
Organism=Escherichia coli, GI87081845, Length=274, Percent_Identity=33.2116788321168, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI1787055, Length=447, Percent_Identity=25.503355704698, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI1788849, Length=428, Percent_Identity=27.3364485981308, Blast_Score=132, Evalue=8e-32,
Organism=Escherichia coli, GI87082096, Length=424, Percent_Identity=26.6509433962264, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI87081743, Length=276, Percent_Identity=33.695652173913, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1788502, Length=267, Percent_Identity=31.8352059925094, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=29.8319327731092, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI87081980, Length=252, Percent_Identity=31.7460317460317, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1788381, Length=245, Percent_Identity=30.2040816326531, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI87081977, Length=166, Percent_Identity=33.7349397590361, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1788956, Length=171, Percent_Identity=32.1637426900585, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1789453, Length=101, Percent_Identity=34.6534653465347, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787410, Length=236, Percent_Identity=28.8135593220339, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=33.1360946745562, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI87082007, Length=159, Percent_Identity=34.5911949685535, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081881, Length=184, Percent_Identity=31.5217391304348, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1789650, Length=448, Percent_Identity=20.0892857142857, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI145693134, Length=167, Percent_Identity=30.5389221556886, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=26.7045454545455, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787802, Length=127, Percent_Identity=29.9212598425197, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=28.2208588957055, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 65072; Mature: 65072

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEQRGHALYDSSLRDLKLALDESSIVAITDRKGLITYVNDKFCEISKYKRKELIGKDHR
CCCCCCCHHHCCCHHHHHEEECCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHCCCCHH
ILNSGHHPKTFFQDLWKRILNGKVWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIA
HHCCCCCCHHHHHHHHHHHHCCCEEEHHHHCCCCCCEEEEEEEEHHHHHCCCCCCEEEEE
IRNDISSRKEAEHRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFD
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHCCEEEEE
LDRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEECCCCHHHHHHH
ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC
HHHHHHHHCCCCEEECCEEEEEECCCCCCCCCCCHHHHHHHCCCCCEEEEHHHCCCCEEE
FFTDELRAKINRRMKVEFALQKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTEDGPI
EEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC
SPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPNYQEGLKLSVNLSIQQLMQKRFILSV
CHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCHHHCCEEEEECHHHHHHHHHHHHHH
RSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLYYLK
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHH
QLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLLQSM
HCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHH
SCDYVQGFYYAKPLSVGELKEKLITDF
CCHHHHCCCEECCCCHHHHHHHHHCCC
>Mature Secondary Structure
MLEQRGHALYDSSLRDLKLALDESSIVAITDRKGLITYVNDKFCEISKYKRKELIGKDHR
CCCCCCCHHHCCCHHHHHEEECCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHCCCCHH
ILNSGHHPKTFFQDLWKRILNGKVWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIA
HHCCCCCCHHHHHHHHHHHHCCCEEEHHHHCCCCCCEEEEEEEEHHHHHCCCCCCEEEEE
IRNDISSRKEAEHRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFD
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHCCEEEEE
LDRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEECCCCHHHHHHH
ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC
HHHHHHHHCCCCEEECCEEEEEECCCCCCCCCCCHHHHHHHCCCCCEEEEHHHCCCCEEE
FFTDELRAKINRRMKVEFALQKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTEDGPI
EEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC
SPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPNYQEGLKLSVNLSIQQLMQKRFILSV
CHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCHHHCCEEEEECHHHHHHHHHHHHHH
RSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLYYLK
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHH
QLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLLQSM
HCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHH
SCDYVQGFYYAKPLSVGELKEKLITDF
CCHHHHCCCEECCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]